Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g29 ATGTTGATGATGAATCAACTGACCCACCGGGGACTAGCCAATCTCAGCAAGGTGTACGGTGGCCTGCTGCATATGAAGATGGGAGTCTTGCACTTAGTGGTCGTGTCCACCCCGGAGATGGCTCGTGAAGTTCTCCAGGTGCAGGACAGTGTTTTCGCCAACCGGCCAGCCAGGGTTGCGATAAAATATCTGACATATGATAGAGCGGACATGGCCTTCGCTCAATACGGACCCTCTTGGAGGCAGATGAGGAAGATTTGTGTGATGAAGCTCTTCAGTCGAAAACGGGCTGAGTCTTGGGCGTCGGTGAGGGAGGAGGTGGATTCAACGCTTCAAAGTATCGCCAAGAGAGGTGGGTCTGCTGTTAATATTGGTGAATTGGCGTTGGACCTCACCAAGAATATAACGTACAGGGCTGCGTTCGGGTCGAGTTCGCGAGAAAAACAGGAGGAGTTCGTGAAGATTTTGCAGGAGTTCTCGAGGCTTTTTGGGGCTTTCAACTTTGCAGATTTTATACCCTGGCTGGGTTGGATTCAAGGGAAGGAGTTCAATAAGCGGCTGGTCAAGGCTCGAGGATCACTTGATGAGTTCATCGATAAAATCATCGACGATCACATTGAAAAGAGGAAGAAGCAGAATAACAGCGGAGATGAAAGTGAAAGTGAAGCAGAGTTGGACATGGTGGACGAGTTAATGGAGTTTTACAGCGAAGATGTTGCAGCGGAAGACTTGAATTCTTCAATAAAGTTCACAAGGGATAACATCAAAGCTATCATTATGGACGTGATGTTTGGTGGAACAGAAACTGTGGCATCGGCAATCGAGTGGGCAATGGCGGAGCTCATGAAAAGCCCAGATGATCTGAAGAAACTGCAGCAAGAATTAACAGATGTGGTGGGCTTGAACCGAAGGTTACACGAGTCCGATCTGGAGAAGCTCACCTACCTCAAGTGCTGCATCAAGGAAACCCTCCGGCTCCACCCTCCAATCCCAGTTCTCCTCCACGAGACCTCCGAGGCTAGTGTGGTGGCCGGATACTCAGTCCCAGCACGCTCAGATGTCATGATCAACGCCTGGGCTATAAACCGAGACAAGACCGCCTGGGAGGATCCGGAGACGTTCAAGCCAGAGAGGTTTCTGAAGAAGGACGCACCTGATTTCAAAGGGAGCCACTTTGAGTTCATTCCATTCGGGTCCGGCCGGCGGTCGTGCCCGGGTATGCAGCTTGGGCTGTATGGATTGGATCTGGCTGTGGCTCACCTTGTTCATTGTTTTAGCTGGGAACTGCCTGATGGAATGAAGGCTAGTGATCTGGATATGAGCGATCTGTTTGGACTCACTGCTCCGAGGGCGATACAGCTGGTCGCAGTGCCGACTTATCGCCTGCAGTGTCCGCTCCTTGAGTGA 1407 51.03 MLMMNQLTHRGLANLSKVYGGLLHMKMGVLHLVVVSTPEMAREVLQVQDSVFANRPARVAIKYLTYDRADMAFAQYGPSWRQMRKICVMKLFSRKRAESWASVREEVDSTLQSIAKRGGSAVNIGELALDLTKNITYRAAFGSSSREKQEEFVKILQEFSRLFGAFNFADFIPWLGWIQGKEFNKRLVKARGSLDEFIDKIIDDHIEKRKKQNNSGDESESEAELDMVDELMEFYSEDVAAEDLNSSIKFTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPDDLKKLQQELTDVVGLNRRLHESDLEKLTYLKCCIKETLRLHPPIPVLLHETSEASVVAGYSVPARSDVMINAWAINRDKTAWEDPETFKPERFLKKDAPDFKGSHFEFIPFGSGRRSCPGMQLGLYGLDLAVAHLVHCFSWELPDGMKASDLDMSDLFGLTAPRAIQLVAVPTYRLQCPLLE* 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 457047 458789 + Vvi3g29 Vvi3g29 783704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g29 468 Gene3D Cytochrome P450 1 460 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS P450 superfamily signature 265 282 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS P450 superfamily signature 318 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS P450 superfamily signature 395 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 397 406 IPR017972 GO:0005506|GO:0016705
Vvi3g29 468 PANTHER CYTOCHROME P450 84A1-RELATED 1 467 - -
Vvi3g29 468 Pfam Cytochrome P450 8 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 SUPERFAMILY Cytochrome P450 4 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 1 467 - -
Vvi3g29 468 PRINTS E-class P450 group I signature 16 35 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 40 61 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 254 271 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 274 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 317 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 357 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 394 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g29 468 PRINTS E-class P450 group I signature 404 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g29 Vvi4g1072 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g29 K09755 - vvi:100250277 935.25