Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g293 ATGGGTTGCTTTTCTTGCTTGAGCCCTCGGAGGGATGATGTCAGCATGATCGAGGGCAGTGGGCAGAGGCGCCATTCCGCTGATTTTCCAGACCATGGGAAGGGAGGATCAGTGAGTAACAAAGGCAAGGATAAAAGCAGCCAAAATGGCACTGGTGCAAAAAGTTTCACCTTTCAACAACTCATTAATGCAACAAGAAGTTTCAAGGTCATGATTGGAGAAGGGGGTTTTGGGAAGGTTTATAAAGGCAAGCTAGAAAATGGCCAGATTGTTGCAATCAAATGGCTCAATCATGAGGGCATTCAAGGAAGTCAGGAATTTATCATGGAGGTTCTCTTGTTGAGCCTTTTGCGCCATTCTAATCTTGTCTGCTTAATTGGCTACTGTACTGATGGAGATCAAAGGCTCTTGGTTTATGAATACATGCCCATGGGAAGCTTGGAAGATCATCTCTTTGACGTTGGCCCCAACAAGGCACCATTGGAATGGAACACCCGGATGAAAATTGCTGTTGGCACTGCTAGGGGCCTGGAGTATCTTCACTGCAAAGCAAACCCACCTGTCATCTACCGAGATTTGAAATCTGCAAATATACTCTTGGACAATGACTTCCATCCCAAGCTTTCTGATTTTGGACTTGCTAAATTTGGACCTGTTGGTGACAACACCCATGTTACAACCCGGGTTATGGGAACACATGGATATTGCGCCCCGGAGTATGCAATGAGTGGTAAACTGACCCTCAAATCTGATGTATATAGCTTTGGTGTTGTTTTGTTGGAACTGATCACTGGACGGATGGCAATCGACTCTACTAGGTTGCAGGGAGAGCAGAACCTAGTAAATTGGGCTCGGCCTCTCTTCAAGGACCGGAGGCGATTCTCTCAGCTGGTGGATCCTCTGTTGCGAGGCCGCTTCCCTGTCCGGTGTCTACACCATGCAATTGCCATAACTGCAATGTGCCTGCAGGAGCAGGCTACATACCGGCCACTGATAAGTGATGTTCTGGTAGCTCTGGAGTACTTGGCCTCCCAACCTTACAACCCAGAAGCTCATTCTCGTGGCAGCCCCTCACCTTGCTCCCCTCTCCATGCCTAA 1098 48.09 MGCFSCLSPRRDDVSMIEGSGQRRHSADFPDHGKGGSVSNKGKDKSSQNGTGAKSFTFQQLINATRSFKVMIGEGGFGKVYKGKLENGQIVAIKWLNHEGIQGSQEFIMEVLLLSLLRHSNLVCLIGYCTDGDQRLLVYEYMPMGSLEDHLFDVGPNKAPLEWNTRMKIAVGTARGLEYLHCKANPPVIYRDLKSANILLDNDFHPKLSDFGLAKFGPVGDNTHVTTRVMGTHGYCAPEYAMSGKLTLKSDVYSFGVVLLELITGRMAIDSTRLQGEQNLVNWARPLFKDRRRFSQLVDPLLRGRFPVRCLHHAIAITAMCLQEQATYRPLISDVLVALEYLASQPYNPEAHSRGSPSPCSPLHA* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2766207 2771472 - Vvi3g293 Vvi3g293 783968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g293 365 Pfam Protein kinase domain 70 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g293 365 ProSiteProfiles Protein kinase domain profile. 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g293 365 PANTHER OS07G0668900 PROTEIN 41 356 - -
Vvi3g293 365 Gene3D Transferase(Phosphotransferase) domain 1 142 354 - -
Vvi3g293 365 MobiDBLite consensus disorder prediction 16 31 - -
Vvi3g293 365 CDD STKc_IRAK 72 340 - -
Vvi3g293 365 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Vvi3g293 365 Gene3D Phosphorylase Kinase; domain 1 38 141 - -
Vvi3g293 365 SMART serkin_6 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g293 365 SUPERFAMILY Protein kinase-like (PK-like) 51 340 IPR011009 -
Vvi3g293 365 PANTHER OS07G0668900 PROTEIN 41 356 - -
Vvi3g293 365 MobiDBLite consensus disorder prediction 16 52 - -
Vvi3g293 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g293 Vvi18g90 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76567 PF00069 Pkinase 2.10E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g293 - - vvi:100854748 743.806