Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g298 ATGGCGGCGGCGCAGAACCAAGCGCCGAATGTGGATCTCTTCGATGCGTATTTTCGAAGGGCGGATTTGGATCGAGATGGCCGGATTAGTGGCTCCGAGGCCGTCGCCTTCTTCCAGACCACCAATTTGCCTAAGCATGTTCTTGCACAGATATGGACGTATGCAGACCATAACCGGATCGGTTTCCTTGGTCGGGCTGAGTTCTATAATGCTCTTAAACTTGTCACTGTGGCACAAAGCAAGCGTGAGCTAACCCCTGACATTGTGAAGGCAGCATTGTATGGCCCAGCTGCAGCTAAGATACCTGCACCACAGATAAATCTTGCTGCCGCTCCTACACAGATGAATACTGCTGCACCAGCACCAGCACCTGCACCTGCATCTGTCGCTCCAATGGGCTCTCAATATTTTCCCCCTCAGGGAAATCAGTTAATGAGGCCTACTCAAACCTTACCTGTTCCAATCAGAGGGGTTAGTCCCTCCATGTCTCAGGATGGATTTGGGGTTTCTCCATCAGGGCTGACAGCTTCAGTACCATCAAAACCGCAGGTCAGCTCTGGAATCACATCATTAGAACCAGCAGCTAAGAATTCCAAAGCAATGGATGTTACTGGGAATGGGTTTGCTTCTGAATCAATTTTTGGAGGAGATGTGTTTTCCGCCTCCCCGTCTCAACTAAAGCAAGATTCTTCTGTGCATACATCATCATCAGGAAATGCACCCATTTCATCATCCATTGCTCCAAATACTGCTTCTAGTCAATCCCAGCTCCCATGGCCAAGGATTACTCAATCTGACATTCAGAAATATACTAAAGTATTTGTGGCAGTAGACACGGACAGAGATGGGAAAATCACTGGTGAACAGGCACGCAATCTGTTCCTGAGTTGGAGATTGCCAAGAGAGGTTTTAAAGCAGGTGTGGGACTTATCCGATCAGGATAATGATAGCATGCTTTCTCTCAGGGAGTTTTGTACTGCACTTTATCTAATGGAGAGGTACAGGGATGGACGTCCGCTTCCAGCTGTGCTTCCAAGCAGCATCTTTGCTGACTTTCCAACCACAGTTCAACCTATGGCTGGATATGGCAGTGCAGCTTGGAGACCTCCATCAGGTTTGCAACAACAACAAGGAATGCCTGTTTCTGGTGCACGGCATGTAACACCTGCAATGGGAGGGAGGCCTCCACTGCCCCATCGGGCTGATGAAGGAAAGCAGACAAATCAACAGAAGTCAAAAGTGCCAGTGTTAGAGAAACATTTTGTGAATCAACTTAGTAAAGAGGAACAAGACATGCTTAACACAAAGTTTCGAGAGGCAGCAGATGCTAATAAAAAGGTAGAAGAATTGGAGAAAGAAATTTTGGATTCTAAAGAGAAAATTGAGTTTTGCCGCACTAAGATGCAGGAACTTGTTTTATACAAAAGCAGATGTGACAACAGACTTAATGAGATCATTGAGAGGGTAGCTGCTGATAAACGCGAGGCTGAAGCCCTGGCCAAGAAATATGAAGAGAAATACAAGCAATCTGGAGATGTAGCCTCTAAATTAACTATTGAAGAAGCTACATTTCGTGATATTCAGGAGAGGAAAATGGAGCTGTATCAGGCAATTCTCAAGATGGAGGAAAATGGCAGTGCTGATGAGAGCATTCAGGTTCGTGCTGATCGTATCCAGTCTGATCTCGATGAGCTAGTGAAAGCTCTTAATGAGCGCTGCAAGAAGTATGGATTATATGTGAAACCAACCACACTTGTCGAGCTTCCCTTTGGCTGGCAACTTGGAATCCAAGAGGGAGCTGCTGATTGGGATGAAGATTGGGATAAGTTTGAAGAGGAAGGATACGTTTTTGTGAAGGAGCTCACTCTTGATGTACAAAATGCCATAGCACCTCCAAAACCAAAGTCTATGCCAGTTGACAAAGAAAAAGCTTCCACAGCTGAAACTCCAACTGCTGCTTCTTCAAGTGTTGATGTTAAATCGGAGGACCCTCCAAGCATGGAATTTCTTGACTCTCACTTCTTCAAGCCTTTCAGTGAAGATGCCTCACCCCATGCCAAAGACACTCAAAGTGATTATGGAGGTGCAGACTCTTTCCTTTCTGGAGATAAGAGCTTTGATGAACCAACTTGGGGAAAATTTGACACTAATGATGACATGGAGTCAATATGGGGCATGAACTCAATCGGTGCTACTAGCAAGATGGATCATGAGAGACACACAGAAAATTATTTCTTTGGGGACGAGTTTGATCTAAAGCCTATAAGAACAGAGTCATCACAAGCAAGTGGCTCTTTTCCAAAGAAGAGCACGTTTACTTTTGATGATTCTGTACCTAGCACACCACTCTACAGTATAAGCAATTCACCTTCAAGATTCAACGAGGGGTCAGAACACTCTTTTGACCCCTTCTCAAGGTTTGATTCTTTCAAGTCGCATGATTCTGGATTTTTCCAACCACGGGAAACACTTGCAAGATTCGATTCGATGCGCAGTACTGCTGACTATGATCATGGCCATGGGTTTCCATCATCTGATGACTCCGATCCTTTTGGCACCGGGCCCTTTAAGACATCACTGGACAGTCAAACTCCAAGAAGAGGCTCTGATAATTGGAGTGCCTTTTAG 2628 45.4 MAAAQNQAPNVDLFDAYFRRADLDRDGRISGSEAVAFFQTTNLPKHVLAQIWTYADHNRIGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAAPTQMNTAAPAPAPAPASVAPMGSQYFPPQGNQLMRPTQTLPVPIRGVSPSMSQDGFGVSPSGLTASVPSKPQVSSGITSLEPAAKNSKAMDVTGNGFASESIFGGDVFSASPSQLKQDSSVHTSSSGNAPISSSIAPNTASSQSQLPWPRITQSDIQKYTKVFVAVDTDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCTALYLMERYRDGRPLPAVLPSSIFADFPTTVQPMAGYGSAAWRPPSGLQQQQGMPVSGARHVTPAMGGRPPLPHRADEGKQTNQQKSKVPVLEKHFVNQLSKEEQDMLNTKFREAADANKKVEELEKEILDSKEKIEFCRTKMQELVLYKSRCDNRLNEIIERVAADKREAEALAKKYEEKYKQSGDVASKLTIEEATFRDIQERKMELYQAILKMEENGSADESIQVRADRIQSDLDELVKALNERCKKYGLYVKPTTLVELPFGWQLGIQEGAADWDEDWDKFEEEGYVFVKELTLDVQNAIAPPKPKSMPVDKEKASTAETPTAASSSVDVKSEDPPSMEFLDSHFFKPFSEDASPHAKDTQSDYGGADSFLSGDKSFDEPTWGKFDTNDDMESIWGMNSIGATSKMDHERHTENYFFGDEFDLKPIRTESSQASGSFPKKSTFTFDDSVPSTPLYSISNSPSRFNEGSEHSFDPFSRFDSFKSHDSGFFQPRETLARFDSMRSTADYDHGHGFPSSDDSDPFGTGPFKTSLDSQTPRRGSDNWSAF* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2833609 2847123 + Vvi3g298 Vvi3g298 783973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g298 875 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 249 875 - -
Vvi3g298 875 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 7 255 - -
Vvi3g298 875 Coils Coil 482 506 - -
Vvi3g298 875 MobiDBLite consensus disorder prediction 164 190 - -
Vvi3g298 875 MobiDBLite consensus disorder prediction 835 875 - -
Vvi3g298 875 SMART eh_3 258 354 IPR000261 GO:0005515
Vvi3g298 875 SMART eh_3 2 98 IPR000261 GO:0005515
Vvi3g298 875 PANTHER EH DOMAIN 249 875 - -
Vvi3g298 875 PANTHER EH DOMAIN 7 255 - -
Vvi3g298 875 MobiDBLite consensus disorder prediction 680 701 - -
Vvi3g298 875 MobiDBLite consensus disorder prediction 390 412 - -
Vvi3g298 875 ProSiteProfiles EF-hand calcium-binding domain profile. 299 334 IPR002048 GO:0005509
Vvi3g298 875 MobiDBLite consensus disorder prediction 851 875 - -
Vvi3g298 875 Pfam Cytoskeletal-regulatory complex EF hand 260 331 IPR000261 GO:0005515
Vvi3g298 875 SUPERFAMILY EF-hand 10 93 IPR011992 -
Vvi3g298 875 CDD EH 14 80 IPR000261 GO:0005515
Vvi3g298 875 MobiDBLite consensus disorder prediction 629 664 - -
Vvi3g298 875 SMART efh_1 47 75 IPR002048 GO:0005509
Vvi3g298 875 SMART efh_1 13 41 IPR002048 GO:0005509
Vvi3g298 875 SMART efh_1 269 297 IPR002048 GO:0005509
Vvi3g298 875 SMART efh_1 303 331 IPR002048 GO:0005509
Vvi3g298 875 MobiDBLite consensus disorder prediction 224 259 - -
Vvi3g298 875 CDD EH 270 335 IPR000261 GO:0005515
Vvi3g298 875 Coils Coil 433 467 - -
Vvi3g298 875 Gene3D - 243 350 - -
Vvi3g298 875 Pfam EF hand 15 33 IPR002048 GO:0005509
Vvi3g298 875 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Vvi3g298 875 SUPERFAMILY EF-hand 257 351 IPR011992 -
Vvi3g298 875 Gene3D - 7 100 - -
Vvi3g298 875 ProSiteProfiles EH domain profile. 266 355 IPR000261 GO:0005515
Vvi3g298 875 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Vvi3g298 875 MobiDBLite consensus disorder prediction 647 661 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g298 K12472 EPS15; epidermal growth factor receptor substrate 15 - jre:109006655 1053.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g298 Vvi18g78 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41