Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g3 ATGGAGCCAACAAATGGAGGTTTGTCAAGCAATTATGGTAACCCAATTCCAGTAAACTTTGAGCCCTACAAGCTGACTGAGTTCAACTCCACCAAACATAAAAGGATCTGGACATTTGAAGAAAATATGCATTCTGAACCAAAACAGAAGCGGCAGAAGGCTGGCCCAAATGTTGTTGATTATTCTGATCCATTTGCCATTCCCAATTTGCTGGAAGGTTTAGATGCCGGAAGATTCGGAAGTGTGACTAAAGAAATAGAGGCCCTATGTGCTCGAAGGATGCAAATGCTTCAACCTTATTATGTAATGTATCCTTCACTTTCATATATGTGCACGGATTTGGGAAAGAAACAGGGCAAAAAGGCTTCAAAGTTGGTGAATAGAGAGGCCTCTCATTTGGCTCACGAAGATGTTATAGATCTGGAGGATGATCACGTTGTTGATGATGCTCTAACAGCAACAGCTGTAGAAGATGCAACATTACCTGTTGTGATTATCGATTCAGATGATGAAGACTGTGGAGATCAGAAGGTCTCTCATCCACCACAGGAAACAGCCTGGCCTTCTTTCTCATATCAGGAAGTTGTCTTGAGAAAACCTTCTGTTGGACTTCTTGCAAATAATCCTGTGGTTAGGGATTATGTTGGGAGTATAGCCCCAAAAGTAGAAGAGGGAAGTCTGATGGGTGCTACTGAAATCAGAAAAGATAAGGATGTGTATATTGGTGTGGGAGAGAAAAGTTTGGTGGCTAACCTTGAAATGAAAAAAGTGCAAGGTGAATATGTTGGTGTGGAAGATGATATGGAAACCAATGAAGGCAATCTTCGAGCTAAGACTGAAGATGATGGTTTGGCTGATATGTGGCAAGAGTTTGATTTGGCCTTACAATCTTCAAAGGATGTTGCTGTGGATCCTGGAGAAGACGAAAAAGAAAGCAAAGAAGAATGTGAGCATTCTTTTGTTCTGAAGGATGATATTGGTTCTGTTTGTCGCATCTGTGGAGTTGTCAACAAAAGTATTGAAACCATAATTGAGTACCAGTATACTAAGGTGAAAAGATCCAGAACTTACATGTATGAACCTCGAAACACCAAAGATAGAGAGCCAACTGATGACCCTTCAGATGGACTTGGATTTTCTGAGCATAATTTAACTGTAACTGAAATCCACGCACATCCGAGGCACAGCATGCAAATGAAGCCCCATCAAGTGGAGGGCTTCAATTTTCTGGTAAGCAACTTGGTGGCAGAAAATCCTGGGGGTTGCATTTTGGCTCATGCTCCAGGCCGGCCTCAGCAGCTAGAGGTGTTGAAACAATGGGTGGCAGAGAAGAGCATCCTGTTTTTAGGGTACAAGCAGTTCTCCTCAATTGTTTGTGGTGATGGAGCTTCCAAGGCAACAATTGCCTGCCAAGAAATACTGTTAAAGGCCCCTCAGATTCTTATTTTGGATGAGGGTCACACTCCAAGGAATGAGAACACTGATGTTCTGTACTCCCTTGCAAAAGTTCAAACTCCTCGGAAAGTTGTACTCTCAGGCACCCTTTATCAGAACCATGTGAAAGAGGTATTTAATATTTTGAATCTTGTTCGTCCAAAGTTCCTGAAGTTGGAAAGTTCCCGTGCTGTTGTTAAGCGTATAATGAGCAAGGTGGACATCATGGGTGTAAGGAAGCAGTTGAAATCCAATGCTGCAGATGCTTTTTACGACCTGGTGGAAAACACACTCCAGAAGGATGATAATTTCAGGAGGAAAATAACTGTGATACAAGATCTCCGTGAGATGACCAGCAAAGTTCTGCACTACTATAAAGGAGATTTCCTGGATGAGCTACCTGGACTGGTTGATTTCACTGTACTTCTCAATCTCAGTGCCAGACAGAAGAAGGAGGTTGGAAATTTGAACAAGTTTGAGAGGAAGTTCAAGAAAAATTCTGTTGGGAAGCAATTGGATGTAAGAGATGGAGTGAAAGCAAAGTTCTTCCTTAATGTGTTGGCCTTGTGTCAATCTTCAGGGGAGAAATTGTTGGTTTTCAGTCAGTACCTTCTACCACTGAGATTTTTGGAGAAACTAACCATGAAAGTGAAGGGTTGGAGTCCAGGAAAAGAAATATTTGCCATCTCAGGTGAATCTAGTTCAGAGCAACGGGAATGGTCAATGGAACGCTTTAACACCTCTCCTGATGCAAGAGTTTTCTTTGGCTCAATTAAAGCATGTGGGGAAGGAATATCATTGGTTGGGGCATCTAGGGTTCTTATTTTGGATGTCCATCTAAACCCATCTGTGACCCGCCAGGCAATAGGCAGGGCTTTCCGTCCTGGACAAAAGAAGAAAGTGCATGTGTACAAGTTGGTTGCTGCTGATTCACCGGAAGAGGAAGACCACAATTCTTGCTTCAAGAAAGAATTGATTTCAAAGATGTGGTTCGAGTGGAATGAATATAACAGTTTTGTACAGAAGGTGACTCTCACACATCTTCCAAAAAGACTCGTGAGGAGATGGAGACAGGGGATAAGTCATCTGTGCTTTTTCTTTTTCATTCCTTATGAGAGCATTTGTCTGATTTTGTGA 2571 42.2 MEPTNGGLSSNYGNPIPVNFEPYKLTEFNSTKHKRIWTFEENMHSEPKQKRQKAGPNVVDYSDPFAIPNLLEGLDAGRFGSVTKEIEALCARRMQMLQPYYVMYPSLSYMCTDLGKKQGKKASKLVNREASHLAHEDVIDLEDDHVVDDALTATAVEDATLPVVIIDSDDEDCGDQKVSHPPQETAWPSFSYQEVVLRKPSVGLLANNPVVRDYVGSIAPKVEEGSLMGATEIRKDKDVYIGVGEKSLVANLEMKKVQGEYVGVEDDMETNEGNLRAKTEDDGLADMWQEFDLALQSSKDVAVDPGEDEKESKEECEHSFVLKDDIGSVCRICGVVNKSIETIIEYQYTKVKRSRTYMYEPRNTKDREPTDDPSDGLGFSEHNLTVTEIHAHPRHSMQMKPHQVEGFNFLVSNLVAENPGGCILAHAPGRPQQLEVLKQWVAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDEGHTPRNENTDVLYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVKRIMSKVDIMGVRKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVGKQLDVRDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKMWFEWNEYNSFVQKVTLTHLPKRLVRRWRQGISHLCFFFFIPYESICLIL* 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24425 40615 + Vvi3g3 Vvi3g3 783678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g3 856 PANTHER PROTEIN CHROMATIN REMODELING 35 26 429 - -
Vvi3g3 856 PANTHER PROTEIN CHROMATIN REMODELING 35 430 817 - -
Vvi3g3 856 CDD SF2_C_SNF 648 785 - -
Vvi3g3 856 SMART helicmild6 685 774 IPR001650 -
Vvi3g3 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 551 IPR027417 -
Vvi3g3 856 Gene3D - 374 431 IPR038718 -
Vvi3g3 856 Gene3D - 432 574 IPR038718 -
Vvi3g3 856 Gene3D - 632 831 IPR027417 -
Vvi3g3 856 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 660 822 IPR001650 -
Vvi3g3 856 Pfam SNF2-related domain 382 559 IPR000330 GO:0005524|GO:0140658
Vvi3g3 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 812 IPR027417 -
Vvi3g3 856 Pfam Helicase conserved C-terminal domain 664 773 IPR001650 -
Vvi3g3 856 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 26 429 IPR044567 GO:0080188
Vvi3g3 856 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 430 817 IPR044567 GO:0080188
Vvi3g3 856 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 432 533 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g3 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - vvi:100248561 1523.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14644 PF00271 Helicase_C 3.30E-09 CL0023 Vvi TR