Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g300 ATGGGGAGGCTGAAATTTCCAAAGCGTTACTTGATTGTTATTTTGACGTTCATCTCCACATGTGTTTGTTATGTAGAGCGTGTGGGCTTCTCAATTGCCTATACCGTTGCTGCTGATGCTGCTGGGGTAAACCAATCAAGCAAAGGCACAATACTTTCTACCTTTTACTATGGGTATGCTTGTTCACAGGTGCCCGGAGGATGGGCAGCACAGAAACTAGGAGGAAGGCGTGTTCTTCTCCTCTCATTTGTGTTATGGTCGTTAACTTGTGCTTTATTCCCATTGGACCCAAATCATGTCAGGCTCATAGTGATGGCCCGCTTGCTCGTCGGTGTGGCACAAGGGTTCATTTTCCCCTCCATCCACACTGTTCTTGCACAATGGGTCCCACCCCATGAAAGGTCTAGATCTGTTTCTCTCACAACTTCTGGGATGTACCTAGGGGCAGCTGCAGGAATGCTTGTACTTCCAAGCTTGGTGAAGTACAGGGGCCCCCAATCCGTATTTTTTGCTGAAGCAACATTAGGTGCAATGTGGTCTCTACTGTGGCTCAAATATGCCAGTGACCCTCCTCGAGCTGAATACCCAAAAGCCACTGCCTCTGGTTTTGGGGAATCATTGTTGCCAATGAGAGGAAATGTCTCTTTGGTATTGGAAATATGGTGGTTAGGTACATCATTTAGGATCACCATGAATCTGGTTTGGCTTGTGTTGCTTTTGATCCTTTGTATTAGAGGATACACTGAAGGGGTTTTGAATCCTGAAGTTGTGAATATTGGAGCTATATTCACATTTAGCACTATCAATGGGAAAGTTGCAAAGATAGCCATGAAGGCGGCTGAACAAGATGTGAATTCTGATCCAAGCATTCTTGGTGGGAGAAAACTGGCTATAACCCTGCATGATTCCAACTATAGCGGATTTCTCAGCATCGTTGGGGCATTACAATTCATGGAGTCTGACACAGTAGCTATTATTGGTCCACAAAGTGCTGTGATGGCCCATGTACTCTCACATCTTGCAAATGAGCTTCATGTTCCACTACTGTCATTCACAGCCCTGGACCCGGCCCTCTCGCCTCTCCAGTTCCCTTACTTTATTCAAACTGCTCCCAGTGATCTATTCCAGATGACTGCCATTGCAGATATGGTTAGTTATTTTGAATGGAGAGAGGTTATTGCAGTATACTCTGATGATGATCAAAGCCGAAATGGGATAACTACATTAGGTGATAAACTTGCAGAAAGGCAGTGTAAAATCTCCTACAAAGCAGCCCTTCCCCCTGACCCAAAAGCAACTCGTGATCAGGTTTTTAATGAATTGGTGAAGGTTCGAATGATGGAATCCCGAGTAATTGTTCTTCATACTCTTTCCAAAACAGGTCTTTTGGTTTTTGATGTTGCCAAATACCTTGGGATGATGGAGAGTGGTTATGTTTGGATAGCTTCTACTTGGCTATCTACCATACTAGATTCTACTCCGCTTTCCTCCAAGACTGCCGATTCGATCCAAGGAGTTCTCACACTTCGTCCTCATACACCTGATTCAAAAAAGAAAAGGGAGTTTTCATCTAGGTGGAACCATCTGAGTAATGGAACTATTGGTTTGAATCCTTATGGTTTATATGCCTATGATACTGTTTGGATGATTACTTATGCACTTAAAACATTTTTCGATCAGGGTGGCACCATCTCATTCTCCAATATTACATCTGGGACTGCCTTGGTGGCAGGAGAACTGAATCTTGGTGCATTGAGCATTTTTGATGGGGGACAGCAGTTGCTTAAGAACATACTGCAGATCAATAGGACAGGTTTAACTGGCCCTCTACGATTTGGTCCAGACAGATCCCCGGTACATCCTGCATATGAGGTCATTAATGTAGTTGGAACTGGATTCAGGCAGCTTGGATACTGGTCTGACTATTCTGGGCTCTCTGTTGCATCTCCAGATACGCTTTATGCAAAACCGCCTAACCGTTCAAGATCAAACCAACAGTTGTATGATGTATTATGGCCTGGTGAAATAACAAAGAAGCCTCGTGGGTGGGTCTTTCCAAACAATGGGAGACATCTAAGGATTGGAGTTCCAAACCGGGTTAGTTATCGTGATTTTGTGTCAAAAGGAAAAGATACTGATGACCTCCATGGATATTGCATTGATGTATTCACTGCTGCAATAGCCTTGCTCCCATATGCAGTCCCATATAAGTTTGTTCTGTTTGGGGATGGTCTGGAAAACCCGAACTACAACCAGCTTGTATACAAGGTTGCCTCTAATGACTTCGATGCTGCTGTTGGGGACATTGCAATTGTCACCAATCGTACAAAGGCTGTGGATTTTACTCAGCCATATATAGAATCAGGCCTAGTTGTAGTGGCCCCAGTCAAGAAGCTGAACTCAAGTGCTTGGGCTTTCTTGAAGCCTTTTAGTCCATTGATGTGGGGTATAACAGCATCATTTTTCCTTATTGTGGGAGCAGTTGTGTGGATTCTCGAACATCGGATCAATGATGATTTCAGGGGGCCACCTAAGAAACAGATTGTCACAATGTTATGGTTTTCCTTCTCAACCCTGTTTTTTTCCCATAGAGAAAACACAGTAAGCTCACTCGGGCGTATGGTGCTGATCATCTGGCTTTTTGTAGTTCTGATAATCAACTCAAGCTACACTGCAAGCCTGACATCAATCCTGACTGTGCAACAACTATCTTCATCCATTAAAGGAATTGAAACATTGATAACTAGCAATGATCGTATTGGATTCCAAGTAGGGTCCTTTGCAGAGAACTATTTAAGTGACGAACTTGACATCCCTAAATCTAGACTCATTGCTCTTGGCTCACCAGAAGAATATGCCACTGCCCTTGAGAATGGAACTGTCGCTGCTGTGGTTGATGAACGACCCTACATAGAAGTCTTCCTTGCCAGCCACTGCAAGTTCTCAATTGTAGGGCCTCAGTTCACTAGAAGCGGGTGGGGATTTGCATTTCCAAGAGACTCTTCCTTAACTGTTGACTTGTCAACTGCCATCCTCACACTATCAGAGAACGGTGATCTTCAAAGAATCCATGATAAGTGGCTGAAAAATAAAGTTTGTTCAGACAACTCTCAGCTTGGATCTGACCAACTTCAGTTCCAGAGCTTCTGGGGCCTTTTCCTCATCTGTGGGATTGCATGCTTCCTTGCTCTCCTTGTATACTTCTGCATGATGGTACGCCAATTCAGCAAGCAGTTTTCTGAAGCAAGTCCTTCCAGCCATGGCAGCTCTCTCTCTGCACGCCTTCAAACATTCCTATCATTTGTTGATAACAAGGCAGAGGTATCAAAAGCCAAGTCCAAAAGAAAACGCGGAGACATGTCTTTAGATTCCAATGGCAGGGAAGACAAATCAAGAAATGGATCCACGAGAACAAAACAAACAGATCTCCCATCAGAGATTTAA 3444 43.99 MGRLKFPKRYLIVILTFISTCVCYVERVGFSIAYTVAADAAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKLGGRRVLLLSFVLWSLTCALFPLDPNHVRLIVMARLLVGVAQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAAGMLVLPSLVKYRGPQSVFFAEATLGAMWSLLWLKYASDPPRAEYPKATASGFGESLLPMRGNVSLVLEIWWLGTSFRITMNLVWLVLLLILCIRGYTEGVLNPEVVNIGAIFTFSTINGKVAKIAMKAAEQDVNSDPSILGGRKLAITLHDSNYSGFLSIVGALQFMESDTVAIIGPQSAVMAHVLSHLANELHVPLLSFTALDPALSPLQFPYFIQTAPSDLFQMTAIADMVSYFEWREVIAVYSDDDQSRNGITTLGDKLAERQCKISYKAALPPDPKATRDQVFNELVKVRMMESRVIVLHTLSKTGLLVFDVAKYLGMMESGYVWIASTWLSTILDSTPLSSKTADSIQGVLTLRPHTPDSKKKREFSSRWNHLSNGTIGLNPYGLYAYDTVWMITYALKTFFDQGGTISFSNITSGTALVAGELNLGALSIFDGGQQLLKNILQINRTGLTGPLRFGPDRSPVHPAYEVINVVGTGFRQLGYWSDYSGLSVASPDTLYAKPPNRSRSNQQLYDVLWPGEITKKPRGWVFPNNGRHLRIGVPNRVSYRDFVSKGKDTDDLHGYCIDVFTAAIALLPYAVPYKFVLFGDGLENPNYNQLVYKVASNDFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVKKLNSSAWAFLKPFSPLMWGITASFFLIVGAVVWILEHRINDDFRGPPKKQIVTMLWFSFSTLFFSHRENTVSSLGRMVLIIWLFVVLIINSSYTASLTSILTVQQLSSSIKGIETLITSNDRIGFQVGSFAENYLSDELDIPKSRLIALGSPEEYATALENGTVAAVVDERPYIEVFLASHCKFSIVGPQFTRSGWGFAFPRDSSLTVDLSTAILTLSENGDLQRIHDKWLKNKVCSDNSQLGSDQLQFQSFWGLFLICGIACFLALLVYFCMMVRQFSKQFSEASPSSHGSSLSARLQTFLSFVDNKAEVSKAKSKRKRGDMSLDSNGREDKSRNGSTRTKQTDLPSEI* 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2864533 2872609 + Vvi3g300 Vvi3g300 783975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g300 1147 MobiDBLite consensus disorder prediction 1107 1136 - -
Vvi3g300 1147 SUPERFAMILY MFS general substrate transporter 5 249 IPR036259 -
Vvi3g300 1147 Gene3D - 275 620 - -
Vvi3g300 1147 Gene3D - 803 929 - -
Vvi3g300 1147 SMART AABind_6 691 1031 IPR001638 -
Vvi3g300 1147 Gene3D - 372 645 - -
Vvi3g300 1147 Pfam Bacterial extracellular solute-binding proteins, family 3 702 1029 IPR001638 -
Vvi3g300 1147 CDD GluR_Plant 692 1028 - -
Vvi3g300 1147 ProSiteProfiles Major facilitator superfamily (MFS) profile. 12 393 IPR020846 GO:0022857
Vvi3g300 1147 MobiDBLite consensus disorder prediction 1106 1147 - -
Vvi3g300 1147 Gene3D MFS general substrate transporter like domains 7 198 IPR036259 -
Vvi3g300 1147 PANTHER GLUTAMATE RECEPTOR 3.6 250 1141 - -
Vvi3g300 1147 Pfam Major Facilitator Superfamily 17 266 IPR011701 GO:0022857|GO:0055085
Vvi3g300 1147 Pfam Ligand-gated ion channel 1030 1060 IPR001320 GO:0015276|GO:0016020
Vvi3g300 1147 Pfam Receptor family ligand binding region 274 630 IPR001828 -
Vvi3g300 1147 Gene3D - 994 1027 - -
Vvi3g300 1147 Gene3D - 955 993 - -
Vvi3g300 1147 SUPERFAMILY Periplasmic binding protein-like II 670 1032 - -
Vvi3g300 1147 SUPERFAMILY Periplasmic binding protein-like I 253 684 IPR028082 -
Vvi3g300 1147 SMART GluR_14 693 1030 IPR001320 GO:0015276|GO:0016020
Vvi3g300 1147 CDD PBP1_GABAb_receptor_plant 258 647 IPR044440 -
Vvi3g300 1147 Gene3D - 684 802 - -
Vvi3g300 1147 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 250 1141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g300 Vvi7g1211 ECH
Vvi3g300 Vvi18g71 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g300 K05387 - vvi:100241875 1797.33