Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g306 ATGGCTCTTCTTTCCTCATTTTCTAAGGTCTCCATCCTTGCTTTGTCTCTGTCCCTCCTTGCTTTTTCTTCTCTGGCTCGTGATTTTTCCATTGTGGGTTACTCACCGGAGGACTTGACCTGCATAGATAAGCTCATTGCTCGCTTTGAATCATGGGTGTCGAAACATGGCAAAGTTTATAAGAGCATGGAAGAGAAGCTGCATAGGTTTGAGGTGTTCAGAGAAAACTTGAATCACATTGATGAGAGGAACAAGGAGGTGAGTAGCTACTGGCTTGGGTTGAATGAGTTTGCAGACTTGAGCCACGAAGAGTTTAAGAGCAAAGATGTTGCTGATTTGCCGGAGTCTGTGGACTGGAGGAAGAAAGGAGCTGTTACCCATGTCAAGAACCAAGGTGCATGTGGTAGTTGTTGGGCATTTTCAACAGTTGCTGCTGTTGAGGGCATCAACCAGATTGTGACAGGAAATCTAACGACACTGTCAGAGCAAGAGTTGATTGACTGTGACACAACCTTCAACAGTGGCTGCAATGGAGGCTTGATGGATTATGCATTTGCCTTCATAGCTTCTAATGGTGGCCTACACAAGGAGGATGATTACCCATATCTAATGGAGGAAGGCACTTGTGAGGAACAGAAGGAAGATGTGGATATTGTGACAATTAGTGGTTATGAAGATGTGCCAGAGAAGGATGAAGAGAGTCTCTTGAAGGCACTCGCTCACCAGCCACTCAGTGTTGCTATTGAGGCTTCAGGCAGAGATTTCCAGTTTTACAGCGGGGGAGTATTCAATGGGCCTTGTGGAACTGAACTGGATCATGGAGTGGCTGCTGTGGGATATGGATCATCAAAGGGGTTGGATTACATCATTGTGAAGAACTCATGGGGACCAAAATGGGGTGAGAAAGGGTACATAAGGATGAAGAGAAATACAGGAAAAACTGAAGGGCTCTGTGGTATCAACAAAATGGCTTCTTACCCTACCAAAGATAACTGA 996 45.28 MALLSSFSKVSILALSLSLLAFSSLARDFSIVGYSPEDLTCIDKLIARFESWVSKHGKVYKSMEEKLHRFEVFRENLNHIDERNKEVSSYWLGLNEFADLSHEEFKSKDVADLPESVDWRKKGAVTHVKNQGACGSCWAFSTVAAVEGINQIVTGNLTTLSEQELIDCDTTFNSGCNGGLMDYAFAFIASNGGLHKEDDYPYLMEEGTCEEQKEDVDIVTISGYEDVPEKDEESLLKALAHQPLSVAIEASGRDFQFYSGGVFNGPCGTELDHGVAAVGYGSSKGLDYIIVKNSWGPKWGEKGYIRMKRNTGKTEGLCGINKMASYPTKDN* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2911376 2912923 + Vvi3g306 Vvi3g306 783981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g306 331 Gene3D Cysteine proteinases 28 330 - -
Vvi3g306 331 SMART Inhibitor_I29_2 49 105 IPR013201 -
Vvi3g306 331 SMART pept_c1 113 328 IPR000668 GO:0006508|GO:0008234
Vvi3g306 331 CDD Peptidase_C1A 114 327 IPR039417 -
Vvi3g306 331 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 105 329 - -
Vvi3g306 331 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 108 - -
Vvi3g306 331 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 271 281 IPR025660 -
Vvi3g306 331 PANTHER CYSTEINE PROTEASE XCP1-LIKE 25 108 - -
Vvi3g306 331 PANTHER CYSTEINE PROTEASE XCP1-LIKE 105 329 - -
Vvi3g306 331 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 288 307 IPR025661 -
Vvi3g306 331 Pfam Papain family cysteine protease 113 328 IPR000668 GO:0006508|GO:0008234
Vvi3g306 331 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Vvi3g306 331 PRINTS Papain cysteine protease (C1) family signature 131 146 IPR000668 GO:0006508|GO:0008234
Vvi3g306 331 PRINTS Papain cysteine protease (C1) family signature 273 283 IPR000668 GO:0006508|GO:0008234
Vvi3g306 331 PRINTS Papain cysteine protease (C1) family signature 288 294 IPR000668 GO:0006508|GO:0008234
Vvi3g306 331 SUPERFAMILY Cysteine proteinases 45 328 IPR038765 -
Vvi3g306 331 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 131 142 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g306 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - vvi:104877917 644.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g306 Vvi18g53 ECH
Vvi3g306 Vvi18g1019 ECH
Vvi3g306 Vvi18g1032 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54