Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g309 ATGAAACCGCCGTTGCGTTACGTGGCTGATCCATCCCCTCTGGTTAACGAGTTCGCCAACTTCTGCCATCAATGGGACCTTCACAGAGCAATGAGAGCCATGGATGCTATGGAAAGACATGGAGTATTTGCTGATGCTATCACGTATTCCGAGCTCATCAAGTGCTGCTCTGCTCGTGGCGCTGTCCAAGAAGGAAAGCGAGTTCACGAGCACATTTTCTGTAAAGGGTATGAGCCCAAAATGTTTGTAGTCAATACCTTACTCAACATGTACGTGAAATTTAACCTCTTGGAAGAGGCCGAGGATCTGTTCGACGAAATGCCTGAAAGAAACGTTGTTTCTTGGACTACTATGATATCTGCCTACTCTAATAAACTCAATGACAAGGCCTTGAAGTGCTTGATTCTAATGTTTAGAGAAGGTGTGAGACCAAATATGTTTACTTACTCTTCAGTTTTGAGAGCATGTGATGGGCTGCCCAACCTTAGGCAGCTCCATTGTGGGATAATCAAGACTGGGTTGGAGTCTGATGTCTTTGTTCGGAGCTTTGAATCTTTTCAAGAGGATGAAGAGAGCTGGAAGACCATGACTAACAGAGGAATCAGGAAAACCCCAGGTTGTAGCTGGATTGAAGTGGATAAACAGATTCATGTGTTTATTTTAGGAGATACATCACACCCAAAAATAGAAGAGATTGTCCAGCGTTTGAATGATTTGATAGAGAGAGTAATGGGAGTAGGCTATGTTCCAGACACAAATTTTGTGTTGCAGGACCTTGAGGGGGAGCAGAAGGAAGATTCTCTTCGATACCATAGTGAGAAACTGGCAATCATGTTCGGTCTGATGAACTTGTCAAGGGAGAAAACAGTTAGAATCAGGAAAAATCTAAGGATTTGCGGAGATTGTCATGTGTTTGCAAAAGTGGTATCGAGGATGGAGCATCGGAGCATTGTGATTCGGGACCCCATCCGGTACCATCATTTTCAAGATGGAGTCTGCTCCTGTGGGGATTATTGGTAG 1020 44.12 MKPPLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSFESFQEDEESWKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2921751 2923596 + Vvi3g309 Vvi3g309 783984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g309 339 Pfam DYW family of nucleic acid deaminases 247 339 IPR032867 GO:0008270
Vvi3g309 339 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Vvi3g309 339 PANTHER - 25 133 - -
Vvi3g309 339 PANTHER - 129 182 - -
Vvi3g309 339 PANTHER - 186 333 - -
Vvi3g309 339 Pfam PPR repeat family 110 156 IPR002885 -
Vvi3g309 339 Gene3D Tetratricopeptide repeat domain 17 225 IPR011990 GO:0005515
Vvi3g309 339 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 133 - -
Vvi3g309 339 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 129 182 - -
Vvi3g309 339 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 186 333 - -
Vvi3g309 339 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Vvi3g309 339 TIGRFAM PPR: pentatricopeptide repeat domain 83 113 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g309 - - - vvi:100265928 378.637
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g309 . . . . . . . . . . . . . Car20g00609 . . . . . . . . . . . . . . . . . . . Cone3ag1256 . . . . . . . . . . . . . . . Cmo20g00704 . . . . Cpe16g00356 . . . . . . . . Cla02g01056 . . . . . . . . . Cme11g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003057 1 1 0 0 1 1 2 0 1 2 2 0 1 2 2 2 0 2 1 1 1 1 1 1 1 2 2 0 1 2 34