Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g310 ATGGGCACCTTCTTCTATGCTCTCTTTATTCTATCTCTACTCTTCTCCACAGTCGGAGCAGATGATGATTCTTCGATCGTCTCCAGGTTCCAACGCTACCTCCAGATCAACACTGCCCAACCAAACCCTAACTACTATGAAGCTGCCGATTTCATCGTCTCTCAAGCTCAATCCATCTCTCTCCATTCCCAAACCCTCGAGTTCCATCATAAATGGACTCACCCTCCGTTCGATGCTCATGTTGATGGAAACGGCGACATCTACGCCAGGGGGTCTCAGGACATGAAGTGTGTTGGTCTGCAGTACCTGGAAGCCATTCGCCGGCTCAAGAGTTCTGGATTTCAGCCGCTTCGAACAGTGTACTTGTCGTTTGTTCCCGATGAGGAGATTGGCGGACACGACGGCGCGGAGAAATTCGCTGATTCGGATGAGTTCAAGAAGATGAATGTTGGAATAGTGCTTGATGAAGGTTTGGCTTCTCCGAATGAGAATTACAGGGCGTTTTATGCGGAGAGGAGTCCGTGGTGGCTGGTAATCAGGGCTACTGGAGCTCCCGGACACGGGGCGAAGCTGTATGACAACACTGCCATGGAGAACATTCTGAAGAGCATTGAGAGTGTGAGGAGGTTTCGGGCAGCACAGTTTGATTTGGTGAAGTCGGGTTTGAAGAGTGAAGGCGAGGTTATCTCGGTCAATATGGTTTTCCTGAAGGCTGGCACACCATCCCCAACTGGCTTTGTCATGAACTTGCAGCCTTCTGAGGCAGAGGCTGGTTTTGACATCCGGATCCCACCAACTGCTGATCAAGTATCCTTGGAGAAACGGATTGCTGAGGAATGGGCACCTGCTTCACGGAACATGACATTTGAGTTTAAGCAAAAGGTTTCAGTGTATGACAAGTTTGGGAAGCCAGTCCTCACAGCTACAGACAGTTCTAATCCATGGTGGACCTTATTAGAAGAAGCTGTGAAGAAAGTCAATGAAAAACTTGGAAGGCCAGAGATCTTTCCTGCCTCAACTGATGCTCGCTATTTCCGGCAACTGGGCTTGCCAGCAATTGGCTTCTCCCCTATGAAAAACACACCTATTCTACTTCATGACCATAATGAGTTTCTGAACCAGGCTGAGTACCTGAGAGGAATTGAGATCTATGAGTCGATAATCAAAGCTTATGCATCTTTCAACGAACATACAAGAGATGAAGACCGCAAAGAAGAATTGTGA 1224 48.12 MGTFFYALFILSLLFSTVGADDDSSIVSRFQRYLQINTAQPNPNYYEAADFIVSQAQSISLHSQTLEFHHKWTHPPFDAHVDGNGDIYARGSQDMKCVGLQYLEAIRRLKSSGFQPLRTVYLSFVPDEEIGGHDGAEKFADSDEFKKMNVGIVLDEGLASPNENYRAFYAERSPWWLVIRATGAPGHGAKLYDNTAMENILKSIESVRRFRAAQFDLVKSGLKSEGEVISVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRIPPTADQVSLEKRIAEEWAPASRNMTFEFKQKVSVYDKFGKPVLTATDSSNPWWTLLEEAVKKVNEKLGRPEIFPASTDARYFRQLGLPAIGFSPMKNTPILLHDHNEFLNQAEYLRGIEIYESIIKAYASFNEHTRDEDRKEEL* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2923761 2927199 - Vvi3g310 Vvi3g310 783985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g310 407 Gene3D Zn peptidases 62 175 - -
Vvi3g310 407 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 92 131 IPR001261 -
Vvi3g310 407 PANTHER AMINOACYLASE-1 68 397 - -
Vvi3g310 407 PANTHER AMINOACYLASE-1 10 70 - -
Vvi3g310 407 Gene3D - 313 394 - -
Vvi3g310 407 Pfam Peptidase family M20/M25/M40 71 389 IPR002933 GO:0016787
Vvi3g310 407 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 68 394 IPR010159 GO:0004046|GO:0005737|GO:0006520
Vvi3g310 407 PIRSF ACY-1 16 70 - -
Vvi3g310 407 PIRSF ACY-1 66 396 - -
Vvi3g310 407 Gene3D - 176 286 - -
Vvi3g310 407 SUPERFAMILY Zn-dependent exopeptidases 24 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g310 K14677 ACY1; aminoacylase [EC:3.5.1.14] - vvi:100260562 801.201
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31