Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g312 ATGGGTGCCCTTCAAGCCATGGTTGTTTGCTTGTTTCTAGTGCGTGCATGCACAACCAATGCCCAGGTTGAGCAATGGAAGTCTGCCACTGCAACATACTCCAAAGAAACAGATGCTTCAATCATAACTGAAGGTGCTTGTGGTTATGGGGACCTTCACAAGACCAGCTATGGAAAGTACAGTGCTGGACTCAGTACCATGTTGTTCAATAGAGGCAGTACCTGTGGGGGCTGCTTTGAATTGAGATGTGTTGATCACATCTTGTGGTGTCTCCAGGGGAGCCCATCTGTTATCCTCACTGCCACAGACTTTTGTCCACCAAATTTTGGGCTTCCAACTGATTATGGTGGCTGGTGCAATTTCCCCCAAGAACATTTTGAGATGTCCGAAGCCGCCTTTGCTGAAATTGCAGGGTTACATGCTGATATAGTTCCAGTTCAGTACAGGAGGGTTAAGTGTCACAGAAATGGAGGAATGAGATTTACAGTGAGTGGGAATTCCCACTACTATCAAGTGTTAATCACCAATGTTGGGTTGGATGGAGAAGTTGTGGCAGTGAAAGTGAAGGGATCAAGAACAGGGTGGATACCCATGGCAAGGAACTGGGGACAAATCTGGCAATGCAATATTAACCTTGAAGGACAACCTCTATCTTTTGAGGTGACAACCAGCAGTGGAAAAACACTCACCTCCTACAATGTTGCTTCAGGAAATTGGAGATTTGGTCAGACATTTGAAGGGAAACAGTTCTAG 753 45.82 MGALQAMVVCLFLVRACTTNAQVEQWKSATATYSKETDASIITEGACGYGDLHKTSYGKYSAGLSTMLFNRGSTCGGCFELRCVDHILWCLQGSPSVILTATDFCPPNFGLPTDYGGWCNFPQEHFEMSEAAFAEIAGLHADIVPVQYRRVKCHRNGGMRFTVSGNSHYYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQIWQCNINLEGQPLSFEVTTSSGKTLTSYNVASGNWRFGQTFEGKQF* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2934473 2935485 + Vvi3g312 Vvi3g312 783987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g312 250 PANTHER EXPANSIN-A20 3 250 - -
Vvi3g312 250 Pfam Lytic transglycolase 62 148 IPR009009 -
Vvi3g312 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Vvi3g312 250 SMART dpbb_1 61 148 IPR007112 -
Vvi3g312 250 SUPERFAMILY Barwin-like endoglucanases 9 176 IPR036908 -
Vvi3g312 250 PANTHER EXPANSIN-A15 3 250 IPR002963 GO:0009664
Vvi3g312 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 158 IPR007112 -
Vvi3g312 250 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Vvi3g312 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Vvi3g312 250 Gene3D - 155 250 IPR036749 -
Vvi3g312 250 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vvi3g312 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vvi3g312 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vvi3g312 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Vvi3g312 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Vvi3g312 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vvi3g312 250 Gene3D - 14 154 IPR036908 -
Vvi3g312 250 Pfam Expansin C-terminal domain 159 235 IPR007117 -
Vvi3g312 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g312 - - vvi:100255490 530.791