Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g314 ATGGCGAGTTTGGTAGGGTCGCCGTGGATGAAGATTAGGGTGATTCCGGAGGTGGCTCCGCCGATTCTCCGCCGCTCGTCCTCTCTGTTCCGGAGGAGTTTTTCAGTGTCTTGTTCGACTGAAGCGCCTCCGAAGAAGCTCGAAGGGGAGGTTCGCGTTCGTTTCGCTCCTTCTCCCACTGGAAACCTCCATGTTGGTGGCGCGAGGACTGCCCTCTTCAATTACTTGTTCGCCAGGTCCAAAGGTGGGAAGTTTGTTCTTAGGATTGAAGATACTGACCTGGAGAGGTCTACTAAGCAATCAGAGGAAGCTCTGTTGCAGGATCTGTCCTGGCTCGGTCTCCACTGGGATGAAGGTCCTGGTGTTGGTGGAGACTATGGTCCTTATAGGCAGTCTGAAAGGAATTCTTTGTACAAGCAATATGCAGAGAAGCTTTTAGAATCTGGTCATGTTTATCAGTGTTTCTGTTCGAATGAGGAATTAGAAAAGATGAAGGAGATTGCAAAGCTAAAGCAACTGCCTCCAGTATACACAGGAAAGTGGGCCAGTGCGACAGCTGAAGAAGTACAAGAAGAGCTAGAAAGGGGAACTCCTTATACATACAGATTTCGTGTGCCAAAAGAGGGAAGTTTGAAAATTGATGACCTTATCCGTGGCGAAGTTAGATGGAACTTGGATACACTTGGAGATTTTGTGATCATGAGGAGTAACGGACAACCAGTTTACAATTTTTGTGTCACAGTTGATGATGCCACCATGGCTATTTCTCATGTTATTAGAGCAGAAGAACATTTACCAAACACTCTCAGGCAAGCATTGTTGTATAAGGCTCTTGGATTTGCCATGCCTTCGTTTGCACATGTTTCCCTAATCCTTGCACCTGATCGGAGTAAACTATCAAAACGACATGGTGCAACTTCAGTGGGTCAGTTCAAGGAGATGGGGTTCCTGCCTCAGGCAATGGTGAACTACCTTGCACTGCTAGGTTGGGGTGATGGCACTGAAAATGAATTCTTCACCCTAAAGCACCTTGTTGAAAAGTTCTCAATTGATCGTGTTAACAAAGGTGGTGCCATCTTTGATTCCACCAAGTTAAGGTGGATGAATGGTCAGCACTTAAGGTCACTCCCATCAGAAGAGTTGACCAAGCTCATTGGTGAGCGCTGGAAAAACACTGGTATTCTCACTCAGTCAGATGGGCCTTTCATAGAGGAGGCTGTTGCGCTGCTCAAGGACGGGATTGATTTGATAACAGATTCAGACAAGGCCCTCTCTAACTTGCTTTCTTATCCTTTATATGCTACCTTAACCAGTCCTGAAGGCAAACCTGTCTTGGAAGATAAGCTGTCTGAAGTTTCATCCAGCTTGTTAGCCGCCTATGACAGCGGCGAACTTCTCCAAGCCCTTGAGGAAGGCCCTGCTGGCTGGCAGAAGTGGGTGAAGAGCTTTGGCAAATCACTGAAACGCAAGGGGAAATCGCTTTTCATGCCTCTTCGAGTTTTGCTAACCGGAAAACTCCATGGCCCAGACATGGGGGCTAGTGTGCTTTTACTCCACAGAGCTGGGACCTGTGGAGTTGTTGCTCCTCAGGTTGGGTTTGTGACACTGGAAGATAGGTTCAAAATGCTGAGAGAAGTTGAATGGGAAGCATTAAACAAGGATCAGCCTCCTCTGGAGTCTGCTGCTCCAGCAATTAACTGA 1701 47.38 MASLVGSPWMKIRVIPEVAPPILRRSSSLFRRSFSVSCSTEAPPKKLEGEVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKQSEEALLQDLSWLGLHWDEGPGVGGDYGPYRQSERNSLYKQYAEKLLESGHVYQCFCSNEELEKMKEIAKLKQLPPVYTGKWASATAEEVQEELERGTPYTYRFRVPKEGSLKIDDLIRGEVRWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALLYKALGFAMPSFAHVSLILAPDRSKLSKRHGATSVGQFKEMGFLPQAMVNYLALLGWGDGTENEFFTLKHLVEKFSIDRVNKGGAIFDSTKLRWMNGQHLRSLPSEELTKLIGERWKNTGILTQSDGPFIEEAVALLKDGIDLITDSDKALSNLLSYPLYATLTSPEGKPVLEDKLSEVSSSLLAAYDSGELLQALEEGPAGWQKWVKSFGKSLKRKGKSLFMPLRVLLTGKLHGPDMGASVLLLHRAGTCGVVAPQVGFVTLEDRFKMLREVEWEALNKDQPPLESAAPAIN* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2937534 2942467 + Vvi3g314 Vvi3g314 783989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g314 566 Hamap Glutamate--tRNA ligase [gltX]. 50 547 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vvi3g314 566 TIGRFAM gltX_bact: glutamate--tRNA ligase 50 520 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vvi3g314 566 Gene3D - 436 525 IPR020751 -
Vvi3g314 566 Pfam tRNA synthetases class I (E and Q), catalytic domain 50 367 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vvi3g314 566 PANTHER GLUTAMATE--TRNA LIGASE 39 545 - -
Vvi3g314 566 Pfam Anticodon binding domain 396 521 IPR045462 -
Vvi3g314 566 SUPERFAMILY Nucleotidylyl transferase 51 359 - -
Vvi3g314 566 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 39 545 - -
Vvi3g314 566 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 361 521 IPR008925 GO:0000049
Vvi3g314 566 Gene3D HUPs 43 376 IPR014729 -
Vvi3g314 566 PRINTS Glutamyl-tRNA synthetase signature 54 66 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g314 566 PRINTS Glutamyl-tRNA synthetase signature 68 79 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g314 566 PRINTS Glutamyl-tRNA synthetase signature 83 96 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g314 566 PRINTS Glutamyl-tRNA synthetase signature 240 250 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g314 566 PRINTS Glutamyl-tRNA synthetase signature 256 264 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g314 566 CDD GluRS_core 50 375 IPR033910 GO:0006424|GO:0008270
Vvi3g314 566 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 57 68 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g314 K01885 EARS, gltX; glutamyl-tRNA synthetase [EC:6.1.1.17] - vvi:100250310 1127.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g314 . Blo15g00412 Bda06g00451 . Bpe07g00684 . . Bma12g00888 Cmo19g00835 . . . . . Sed05g2139 . Cpe15g00657 Bhi05g01543 Tan02g0541 Cmetu11g0170 . Hepe02g0346 . . Cla02g00327 Cam02g0336 Cec02g0336 Cco02g0340 Clacu02g0327 Cmu02g0325 Cre02g0658 . . . Cone10ag1201 . Csa07g00215 . . . . . . . . . . . . . . Cma19g00816 . Car19g00634 . . . . . . . . . . . . . . . . Lsi11g01310 . Chy01g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010497 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 31