Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g315 ATGTGTGATAATTCGTCGGATCCGAATTCGAACTCGCCGGTGTTCGGATTATCGGTTTCCGATGCGGAATTCGTTTTGCAGCCTCTTCTGCTGGCTCTTGATTCGGCCTCCGCGAAGGTCATGGAGCCGGCGCTGGAGTGCTTGTTCAAGTTGTGTTCGCTGGGGCTGATCCGCGGCGTGATTGATAGGAAGGGGATGATAGATGCGGTGTGTAAATCGGCCGGCAGCGGCGAGGACGCGGTCGACCTCGCCGTGCTTAAGGTTCTTCTCTCCGCGGTTCGATCGCCGTGCGTGTACATCAGGGGTGAGTGCTTAGTGCATATTGTGAAAACTTGTTATAATGTGTACCTCGGCAGCGTGAGTGGGACCAATCAGATCTGTGCAAAGGCGGTGCTTGCGCAGATTATGTTGATTGTTTTCGCGAGAATGGAGGAGGATTCGATGGAGGTTGGTATTCGGACGGTGTCGGTGAATGAGTTGTTGGAGTTTACGGATAGGAACTTGAACGAAGGAAATTCTATACAAATTGTTCAGAGTTTTATTTATGAGGTGATGGAAGCGATGGACAATGGAGAAATGGAAAATGGGGCTGAATCTAGTGGCGAGAGTGTGATTCGGGAGGATGGGTTTCTTATTTTCAAGAATTTGTGCAAGTTGTCTATGAAATTCTCATCACAGGATCAATCTGATGATCTGATCCTTTTGAGGGGAAAGATACTGTCTTTGGAGCTGCTTAAGGTTGTAATGAACAATGGGGGTCCAATTTGGCGATCAAATGAAAGGTTTCTCAGTGCTATAAAGCAGTTTCTCTGCTTATCGTTGTTGAAGAACAGTGCATTGTCAGTTATGATTATTTTCCAGCTTCTATGTTCTATTTTCATGAGCTTGTTATCAAAATTCAGATCAGGACTGAAAGAAGAAATCGGAATTTTCTTTCCCATGCTCATCCTCCGGGTGCTCGAGAATGTGCTTCAGCCTAGTTTTCTACAGAAAATGACAGTCCTCAACATACTGGAAAAGATGTCTCATGATTCACATATTATCATCGATATTTTTGTTAACTATGACTGTGATGTGAATGCTCCAAACATATTTGAAAGGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTGAAGTGCTTGGTTAGCATTATTAAGTCAATGGGAGCTTGGATGGATCAACAGCTAATAATAGGAGATTTCTCTCCACCGAAGAGCTCTGAGAGTGAGATTTCAACAGAGAATCATGCAATCATCAATGGAGAAGAAGGAACTATCCCTGACTATGAGCTGCATCCAGAAACAAATTCAGGATTATCAGATGCTGCTGCCTTTGAGCAACGTCGAGCTTATAAACTAGAATTCCAGAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTCTTAAAAATACTGCTGGCCTAAACGAAACTGTGATCGGTGACTATTTGGGTGAAAGAGAGGATTTTTCTTTAAAAGTTATGCATGCTTATGTAGATTCATTTAATTTTGAAGCATTAGATTTTGGTGAAGCAATTAGGTTTTTCCTACGGGGCTTCAGGTTACCTGGAGAGGCACAGAAGATTGATCGCATCATGGAAAAGTTTGCTGAGCGGTATTGTAAATGCAATCCAAATTCATTTACCAGTGCTGATACTGCTTATGTTCTTGCTTACTCTGTGATATTGCTGAACACGGATGCCCACAATAACATGGTGAAAGATAAGATGACCAAGGCTGATTTCATCCGGAATAACCGAGGGATTGATGATGGCAAGGACCTACCTGAAGAGTATCTGGGTGCTATTTATGATCACATTGTAAAAAATGAAATAAAAATGAATGCCGATTCTTCTGCGCCACAGAGCAAGCAGGCAAACGGCTTCAATAAACTACTGGGCTTGGATGGTATATTCAATCTAGTCAATTGGAAGCAGACAGAAGAAAAACCATTGGGTGCGAATGGTCTTCTCATAAAGCACATCCAGGAGCAGTTTAAGGCAAAGTCAGGAAAATCAGAGTCTGTTTATTATGCGGTTACAGATGTAGCTATATTGAGGTTTATGGTGGAGGTCTGCTGGGGTCCTATGCTCGCTGCCTTCAGTGTAACTCTGGATCAAAGTGATGACAAGGTTGCTACTTCTCAATGCTTACAGGGCATCCGACATGCTGTGCATGTTACTGCAGTTATGGGCATGCAGACTCAGAGAGATGCTTTTGTTACAACTGTGGCCAAGTTTACTTTCCTCCACTGTGTTGCAGACATGAAACAAAAAAATGTTGATGCTGTGAAGGCAATAATAGCAATTGCCATTGAAGATGGTAATTTTCTTCAGGAAGCCTGGGAGCACATATTAACATGCCTCTCCCGTTTTGAGCATCTGCAATTGTTGGGAGAGGGCGCACCCCCTGATGCATCCTTTTTCACTACTTCCAACATTGAAACAGATGAAAAAACACACAAAGGGGGATCATATGATAGCACTACACTGGGAGTCAATACGTCAAACTTGGTAACTCCAGAGCAGATGAATAACTTCATTTTAAACTTGCATCTGCTGGATCAGATTGGAAGCTTTGAGTTGAACCACATATTTGCCCATAGCCAAAGGTTGAATAGTGAGGCAATAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTTGCAATATTTGTGATGGATTCTTTGCGGCAACTTGCTATGAAATTTTTAGAGCGTGAAGAGCTGGCAAATTACAACTTTCAAAATGAATTTCTGAGACCTTTTGTGATTGTCATGCAGAAAAGCAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGGTTTTTACGGCTGCAGCTGCTGATGAAAGGAAGAATATAGTCTTGCTAGCCTTTGAGACCATGGAAAAAATAGTGCGAGAATATTTCCCTTACATAACTGAGACAGAGACGACAACTTTTACGGATTGTGTTAGATGCCTCATCACCTTCACAAATAGCAGATTTAACAGTGATGTAAGCCTCAATGCTATTGCATTTCTCCGGTTCTGTGCTGTCAAACTTGCAGAAGGGGGACTTGTTTGCAATGAGAGGAGTGAGGAAGGAGATTCGTCCACTCCACCAGTAGATAAGGATGCATCAGATGGACAATTGTTCACAGATAGAGATGATCATGCATCCTATTGGATTCCATTGCTCACAGGATTGTCAAAGCTAACATCTGATCCCAGATCAGCTATCAGAAAAAGTTCTTTGGAAGTGCTTTTTAACATCCTAAAGGATCATGGTCATCTTTTTTCACGTACATTCTGGGCTGGTGTTTTCAGTTTGGTTGTTTTTCCCATATTTAATTTTGTTAGTGACAAGGGAGGAACAGATGCAAACAATGACCAAGTTTTGCAAGCTTCAAGGCCTCCGCACCCTGATGTAGGCACATGGGATTCAGAAACTTCTGCAGTAGCAGCTCAGTGTCTAGTGGACCTATTCGTCAGTTTCTTCAATGTAGTGAGGTCTCAACTGCTTGCTGTGGTATCAATACTGACTGGTTTCATAAAAAGTCCTGTTCAGGCTCCTGCTAGCACTGGGGTCACTGCATTGGTGCGGTTGGCAGATGATTTGAGCAGCAGACTGTCTGAAGATGAATGGAAAGCTATATTTATTGCTCTGAAAGAAGTGACTGCTTCCACTTTGCCAAGATTTTCAAAGGTTATCACAATCATGGACGACATGGAGGTGCCTGAGGTTTCTCAAGCTTCTCCAGATCTTGAAATGCTTTCTGATAATGGATTGACCAATGATGATATTGGGGATGACACTCTGCAAACAGCAGCTTATGTGGTTTCAAGAATGAAGAGTCATATAGCTATGCAACTACTCATTATACAGGTTGCAACTGATATATACAAAATTTGCAGACAGGCCTTTTTGGCATCCATCATAACAATACTTACTGAAACATTTTCCATGATTGCATCTCATGCTCACCAACTGAACTCTGAAAAAATGCTACTGATGAAGCTGCAGAAAGCATGCTCTATCTTGGAGATCTCTGAACCGCCTGTGGTTCACTTTGAAAATGAGTCCTATCAAAATTACCTCAACTTCCTGCAGCATTTGGTCATGGACAATCCATCCGTGGCCGAGGAGCTAAACATAGAACAACAACTAGTGGGAGTATGTGAAAAAATACTGCAGATATACCTGAACTGTGCCGGGTTACAAAATGCCCCACAAAAACAATCGAGCCAGCCAGTGCTGCACTGGATTCTTCCATTGGGTTCAGCACAAAAAGATGAATTGGCTGCTAGGACTTCTCTTGCAGTGTCAGCATTGCAGGTACTGGGTGGTTTGGGAACGGATTCGTTTAGGAAGTACATTTCACAATTCTTCCCTCTGTTAGTAGACCTTGTGCGAAGCGAGCATAGCTCAGGAGACATTCAACGTGTCCTAAGCTACATGTTCCAATCATGTATAGGTCCGATCATAATGAAATTGTGA 4836 42.58 MCDNSSDPNSNSPVFGLSVSDAEFVLQPLLLALDSASAKVMEPALECLFKLCSLGLIRGVIDRKGMIDAVCKSAGSGEDAVDLAVLKVLLSAVRSPCVYIRGECLVHIVKTCYNVYLGSVSGTNQICAKAVLAQIMLIVFARMEEDSMEVGIRTVSVNELLEFTDRNLNEGNSIQIVQSFIYEVMEAMDNGEMENGAESSGESVIREDGFLIFKNLCKLSMKFSSQDQSDDLILLRGKILSLELLKVVMNNGGPIWRSNERFLSAIKQFLCLSLLKNSALSVMIIFQLLCSIFMSLLSKFRSGLKEEIGIFFPMLILRVLENVLQPSFLQKMTVLNILEKMSHDSHIIIDIFVNYDCDVNAPNIFERTVNGLLKTALGPPPGSTTTLSPIQDLTFRLESVKCLVSIIKSMGAWMDQQLIIGDFSPPKSSESEISTENHAIINGEEGTIPDYELHPETNSGLSDAAAFEQRRAYKLEFQKGISLFNRKPSKGIEFLISSKKIGGSPEEVAAFLKNTAGLNETVIGDYLGEREDFSLKVMHAYVDSFNFEALDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPNSFTSADTAYVLAYSVILLNTDAHNNMVKDKMTKADFIRNNRGIDDGKDLPEEYLGAIYDHIVKNEIKMNADSSAPQSKQANGFNKLLGLDGIFNLVNWKQTEEKPLGANGLLIKHIQEQFKAKSGKSESVYYAVTDVAILRFMVEVCWGPMLAAFSVTLDQSDDKVATSQCLQGIRHAVHVTAVMGMQTQRDAFVTTVAKFTFLHCVADMKQKNVDAVKAIIAIAIEDGNFLQEAWEHILTCLSRFEHLQLLGEGAPPDASFFTTSNIETDEKTHKGGSYDSTTLGVNTSNLVTPEQMNNFILNLHLLDQIGSFELNHIFAHSQRLNSEAIVAFVKALCKVSMSELQSPTDPRVFSLTKIVEIAHYNMNRIRLVWSRIWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIKELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCNERSEEGDSSTPPVDKDASDGQLFTDRDDHASYWIPLLTGLSKLTSDPRSAIRKSSLEVLFNILKDHGHLFSRTFWAGVFSLVVFPIFNFVSDKGGTDANNDQVLQASRPPHPDVGTWDSETSAVAAQCLVDLFVSFFNVVRSQLLAVVSILTGFIKSPVQAPASTGVTALVRLADDLSSRLSEDEWKAIFIALKEVTASTLPRFSKVITIMDDMEVPEVSQASPDLEMLSDNGLTNDDIGDDTLQTAAYVVSRMKSHIAMQLLIIQVATDIYKICRQAFLASIITILTETFSMIASHAHQLNSEKMLLMKLQKACSILEISEPPVVHFENESYQNYLNFLQHLVMDNPSVAEELNIEQQLVGVCEKILQIYLNCAGLQNAPQKQSSQPVLHWILPLGSAQKDELAARTSLAVSALQVLGGLGTDSFRKYISQFFPLLVDLVRSEHSSGDIQRVLSYMFQSCIGPIIMKL* 1612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2942481 2962563 + Vvi3g315 Vvi3g315 783990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g315 1611 ProSiteProfiles SEC7 domain profile. 466 653 IPR000904 GO:0005085|GO:0032012
Vvi3g315 1611 MobiDBLite consensus disorder prediction 1143 1162 - -
Vvi3g315 1611 SUPERFAMILY ARM repeat 824 1584 IPR016024 -
Vvi3g315 1611 Pfam Domain of unknown function (DUF1981) 1000 1082 IPR015403 -
Vvi3g315 1611 Gene3D - 459 547 - -
Vvi3g315 1611 SUPERFAMILY Sec7 domain 470 661 IPR035999 GO:0005085|GO:0032012
Vvi3g315 1611 SMART sec7_5 470 655 IPR000904 GO:0005085|GO:0032012
Vvi3g315 1611 Gene3D - 989 1213 IPR011989 -
Vvi3g315 1611 Pfam BIG2 C-terminal domain 1402 1600 IPR046455 -
Vvi3g315 1611 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 207 364 IPR032691 -
Vvi3g315 1611 Pfam Sec7 domain 474 655 IPR000904 GO:0005085|GO:0032012
Vvi3g315 1611 Pfam Dimerisation and cyclophilin-binding domain of Mon2 22 146 IPR032629 -
Vvi3g315 1611 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 1 7 1605 - -
Vvi3g315 1611 Gene3D - 548 667 IPR023394 -
Vvi3g315 1611 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 7 1605 - -
Vvi3g315 1611 SUPERFAMILY ARM repeat 19 1092 IPR016024 -
Vvi3g315 1611 CDD Sec7 473 655 IPR000904 GO:0005085|GO:0032012
Vvi3g315 1611 Pfam C-terminal region of Mon2 protein 1173 1245 IPR032817 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g315 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - vvi:100250471 3060.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33