Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g320 ATGCACCGTGCGGCTGTTTCTCCCCCGTCTCTTGACCTGCTGCCTTTTCACCACAATCATAAGTATAGGAAGAAGAAGAGGAGAGGCAAGGAATTGCCCTTTACTACTCCGGTCTACGAGCTCTTTCATTTCATATTCAGTCTTCGAGTTGATTGTGAGATTCACATGAGTGCCAGCAGGCAGAGGACCCTCAGTGGAGGGGGTCAGATTGTGTTGGACTATTTGAAGCGAATGCAGGCGGAAAATCCTTCTTTCTATTATGCAGTTCAAGGTGATAATGATCATTCTGCTGGAAATATATTTTGGGCTGATGCAACTTCCAGGATGAACTATAACTATTTTGGAGATGCAGTTACCTTTGACACAACATGCAGAACAAACCGATACAGGGTACCATTGACTGCATTCACAGGGCTGAATCATCATGGCCAGCCAGTTTTGTTTGGCTGTGCATTACTTTTCAATGAATCTGAATCCTCATTTGTTTGGTTGTTCCAATCTTGGCTTAATGCAATGTCTGGACGTGCCCCCGTCTCAATCACCACCGACCCAGACCGGTTCATACAGGTGGCTGTTTCTCAAGTGCTTCCTGAGACCCGTCATCGCTTCTCTAAGTGGGGGATCTTTAGAGAAACACAAGAGAAATTGGCTCACATTTATCAATCGCATCCTACATTTGAACCAGAGTTTCAGAAATGCATTAATGAGACTGAGACAATCGATGAGTTTGAGTCATGTTGGGAATCGCTCCTGGAAAGATACTACCTTATGGATAATGAATGGCTTCAGTCAATGTACAATGCTCGCCAGCAGTGGGTACCAGTCTACATGCGAGATACCTTTTTTGGGGAGATGCATGCAAACAAAGGAAATGAGGGTATGAGCTCATTCTTTGATGGGTATGTGAATGCGGCAACCACCATTCAGATGTTGATCAAACAATATGAGAAAGCTGTAGCAAGTTGGCATGAAAAGGAATTAAAGGCTGATTATGATACGAGCAACACTACTCCAGTTCTGAAGACACCATCTCCTATGGAAAAACAAGCTGCAAACCTTTACACAAGGAAAATATTCATAAAATTCCAAGCAGAATTGGTTGAGACCCTTGCTAATCCTGCAACTAAAATTGATGATTCTGGAACTGTCACCACATATCGAGTTTCCAAATTTGGGGATGATCACAAGGCACACTCTGTTAGGTTCAATGCTTTCGAGATGAAGGCTAGTTGTAGCTGTCAAATGTTTGAATTTTCAGGTATTATTTGTAGGCACATTTTGGCAGTTTTCAGAGCAAAAAATGTTCTTACGCTTCCTTCTCAATATATTTTGAAACGATGGACAAGAAATGCCAAGAGTGGAGCTGTGTTGGATGAACAAGCTTCTGAATTGCCAAGCAATTCTAGGGAGTCTTTAACTGTTCGTTATAACAGTCTACGTCAGGAAGCAATCAAATATGTAGAAGAAGGGGCAAAATCCATACATGTTTATAATGTGGCAATGGATGCTTTACAAGAGGCTGTTAGAAAGGTTGCTGCTGCAAAAAATAAAGGTCCTGGAGCTGCACAAGGTGGCACACTGGCAAATGGAGGCAATCAAGAGATGTGTGCCAGAGAAGAAAATAGAACAGCGCCGTATCAATCTGTGGATGAGAAGGAAAAGAAAATTCGTGACTTGGCTTCTGAGTTGGAGAGTACTAATCAACGATGTGAAGTATATCGAGCTAACCTACTTGCAGTTTTGAAAGATATGGAGGACCAGAAGTTAAAGCTCTCAGTAAAAGTTCAGAATGCAAGGCTTAGTTTGAAGGAGTGA 1815 42.31 MHRAAVSPPSLDLLPFHHNHKYRKKKRRGKELPFTTPVYELFHFIFSLRVDCEIHMSASRQRTLSGGGQIVLDYLKRMQAENPSFYYAVQGDNDHSAGNIFWADATSRMNYNYFGDAVTFDTTCRTNRYRVPLTAFTGLNHHGQPVLFGCALLFNESESSFVWLFQSWLNAMSGRAPVSITTDPDRFIQVAVSQVLPETRHRFSKWGIFRETQEKLAHIYQSHPTFEPEFQKCINETETIDEFESCWESLLERYYLMDNEWLQSMYNARQQWVPVYMRDTFFGEMHANKGNEGMSSFFDGYVNAATTIQMLIKQYEKAVASWHEKELKADYDTSNTTPVLKTPSPMEKQAANLYTRKIFIKFQAELVETLANPATKIDDSGTVTTYRVSKFGDDHKAHSVRFNAFEMKASCSCQMFEFSGIICRHILAVFRAKNVLTLPSQYILKRWTRNAKSGAVLDEQASELPSNSRESLTVRYNSLRQEAIKYVEEGAKSIHVYNVAMDALQEAVRKVAAAKNKGPGAAQGGTLANGGNQEMCAREENRTAPYQSVDEKEKKIRDLASELESTNQRCEVYRANLLAVLKDMEDQKLKLSVKVQNARLSLKE* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3008796 3024629 - Vvi3g320 Vvi3g320 783995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g320 604 Coils Coil 549 576 - -
Vvi3g320 604 ProSiteProfiles Zinc finger SWIM-type profile. 386 434 IPR007527 GO:0008270
Vvi3g320 604 Pfam MULE transposase domain 118 208 IPR018289 -
Vvi3g320 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 578 IPR031052 GO:0006355
Vvi3g320 604 Coils Coil 581 601 - -
Vvi3g320 604 SMART 26again6 409 436 IPR006564 GO:0008270
Vvi3g320 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 9 62 578 - -
Vvi3g320 604 Coils Coil 497 517 - -
Vvi3g320 604 Pfam SWIM zinc finger 406 434 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g320 - - - vvi:100262332 1110.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g320 Vvi18g34 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365