Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g321 ATGATAACTATGAAACCAAAAATGGGTAGAAACTGGGTCATCTTCCTCCTCCTTGTGACCTCTGGGGTGGTCATGGCTTCTGCAGCTGAAGTACTGGTGACCCAATTCTCTTATAATGAATTCAATGAGGAGAGGGACACTGGTAGCTTTAAACTTTTAGGGCAGGCCTCCATTGATGGTGGAGCTCTTCAGTTAACTCCCGACACCTCCAATGATGACTACATCTTTATCAACAAAAGCGGCCGCATTTTCTGGCCTAAACCTTTTAAGCTGTGGGATTCCAATGGCGATGAAGAAGACGGCAACCTCGCCTCGTTCGTCTCCTTTTTCGTCATTAACATCTATAGGCAACCAAGCTGGAATGCGGGTGAGGGCTTTGCTTTTGTGATTGCACCCAATCTTACCATACCTGAAGCAAGCCACGGGCAATGGCTTGGCCTCACCAACGCTACCACCGACGGTGACCGCACCAACCAGATCGTGGCGGTGGAGTTCGACACGGAAAAGCAAGACTTTGATCCGGACGACAACCACATCGGCCTTAATATCAACTCGGTTCGCTCATACACTACTGTCTCTCTCACCCCTTCTGGGATAGAAATTTCTCCTGAAGAAGGGACCAACTACAGCGTCTGGGTCCAATACGATGGCCAAGCTAAGGTGATGGAGGTGTACATGGGGAAAGAAGGGGATCCCAAGCCGAGCTCACCGCTTCTTAGAGATACTATAGACCTCAAACATTACGTGAAGCAGGAATCTTACTTCGGGTTCGCTGCTTCCACAGGCTACCCAGCAATCCAGTTGAACTGCGTTTTGAAATGGAAGTTAGACATGGAGATTTTACCCGGAGACAAAGGGTTCATGTGGTGGTTGTTGTCCATACCTGCGGTGATATTGATCTTGGTAGTGGTAGGTGGGATTGTGTATCTGAATTACAAGAAAAGAAGAGAGGGAGGGAATAGAGAGGAAGGCAATGTGCTGGGGGACTTGAGGAGGTTGACAGGGATGCCCAGAGAGTTCAGGTATAAGGATTTGAAGAAGGCGACCAAAAACTTCGATGAGAGTACGAAACTGGGGCAGGGTGGATTTGGAGTTGTTTACAAAGGCGTTTTGCAAGAGGATGGTGATGATTCCACCACTGAGGTTGCTGTAAAGCAATTCTCTAGAGACGACATCAAAGGCAAAGGTGATTTCATGGCGGAGCTCACCATCATTCACCGCCTTCGCCACAAACATCTTGTCCGGTTAGTCGGGTGGTGCTACGAGAAAGGGAAGCTCCTCCTAGTCTACGACTTCATGCCAAATGGGAGCCTAGACAAGCACCTATTTGGGGATCACTATGATAATACGCTGAATTGGGAACGCCGATACAACATAGTTACGGGCGTAGGGTCAGCACTTCTTTACCTGCATAATGAGTTCGACCAGAAGGTGTTAGAACTAGGTGGGTTCCCAGGAACCATGGGCTATGTTGCTCCAGAGTGCTTCCACACACAGAAGGCCACGGTCGAATCTGATGTGTATGCTTTCGGAGCAGTGGTGCTTGAGGTGGTGTGTGGAAGAAGTCCTGGAAGTGAAATCTCTTACAACCAGCGTCTATATAGCTTGGTAGATTGGGTTTGGATGTTACATCGAGAAGGGCGGATTGTAGAAGCTGTGGATGAGAGGCTTGGGAACAATTATGTGGATGATGAAGCAAGAAGACTTCTACTTCTAGGGTTGGCCTGTTCACATCCCTCAGCCAGTGAACGGCCAGCAACACTGGCCATTGTCCAGATTCTATCAGGTTCTGTCTCAGCCCCCCATGTACCTCCATTCAAGCCAGCCTTCACATGGGCCTCCATGGCTAGCCTCACCACCCCCACAACCACCAGCATCATACTTCCTAGCATAGCATCCTTGTCTCCTTAA 1911 49.03 MITMKPKMGRNWVIFLLLVTSGVVMASAAEVLVTQFSYNEFNEERDTGSFKLLGQASIDGGALQLTPDTSNDDYIFINKSGRIFWPKPFKLWDSNGDEEDGNLASFVSFFVINIYRQPSWNAGEGFAFVIAPNLTIPEASHGQWLGLTNATTDGDRTNQIVAVEFDTEKQDFDPDDNHIGLNINSVRSYTTVSLTPSGIEISPEEGTNYSVWVQYDGQAKVMEVYMGKEGDPKPSSPLLRDTIDLKHYVKQESYFGFAASTGYPAIQLNCVLKWKLDMEILPGDKGFMWWLLSIPAVILILVVVGGIVYLNYKKRREGGNREEGNVLGDLRRLTGMPREFRYKDLKKATKNFDESTKLGQGGFGVVYKGVLQEDGDDSTTEVAVKQFSRDDIKGKGDFMAELTIIHRLRHKHLVRLVGWCYEKGKLLLVYDFMPNGSLDKHLFGDHYDNTLNWERRYNIVTGVGSALLYLHNEFDQKVLELGGFPGTMGYVAPECFHTQKATVESDVYAFGAVVLEVVCGRSPGSEISYNQRLYSLVDWVWMLHREGRIVEAVDERLGNNYVDDEARRLLLLGLACSHPSASERPATLAIVQILSGSVSAPHVPPFKPAFTWASMASLTTPTTTSIILPSIASLSP* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3025508 3027713 + Vvi3g321 Vvi3g321 783996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g321 636 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 288 IPR013320 -
Vvi3g321 636 Gene3D Transferase(Phosphotransferase) domain 1 478 612 - -
Vvi3g321 636 ProSiteProfiles Protein kinase domain profile. 352 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g321 636 Pfam Legume lectin domain 34 279 IPR001220 GO:0030246
Vvi3g321 636 Pfam Protein tyrosine and serine/threonine kinase 355 472 IPR001245 GO:0004672|GO:0006468
Vvi3g321 636 Pfam Protein tyrosine and serine/threonine kinase 488 537 IPR001245 GO:0004672|GO:0006468
Vvi3g321 636 ProSitePatterns Legume lectins beta-chain signature. 161 167 IPR019825 -
Vvi3g321 636 ProSitePatterns Protein kinases ATP-binding region signature. 358 385 IPR017441 GO:0005524
Vvi3g321 636 Gene3D Phosphorylase Kinase; domain 1 337 432 - -
Vvi3g321 636 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 10 480 - -
Vvi3g321 636 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 483 627 - -
Vvi3g321 636 SUPERFAMILY Protein kinase-like (PK-like) 334 594 IPR011009 -
Vvi3g321 636 CDD lectin_legume_LecRK_Arcelin_ConA 34 274 IPR001220 GO:0030246
Vvi3g321 636 Gene3D Transferase(Phosphotransferase) domain 1 433 477 - -
Vvi3g321 636 Gene3D - 33 285 - -
Vvi3g321 636 PANTHER - 483 627 - -
Vvi3g321 636 PANTHER - 10 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g321 - - - vvi:100257156 1214.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76569 PF00139 Lectin_legB 4.00E-67 CL0004 Vvi PK