Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3g325 | ATGGAGAAATCAGGGGCATGGAGTTCTAGTCCCTCAACTTCCTCATCAGTAAAAGAGTATCAATCCACCGGTAGTATTATAGATGGGAAGCAGACATTGGAGGTGTTTGAACCGGCACGGAGCCAGGATTTAGAACAGCTGCGTACTGATTATAAGGGTGACAATGAAGATATAGCAGCATCGGCACAAGTAGTAGAGCAGGGAGGCTCTAGTAGGGAGCCTATCAACAAGTGGATGGCATTTCAGAGGGAGGCTTCTGGGAAGTCTAACGTCACTGATAATTCCATTACAGCAAGCACAATAGCTGAAAGAACTGCAGAATGGGGGCTGGTTATGAAATCGGATTTGGGAGACGGTCTGCGAGCATTGGGAAGGTCATTTGGAGAAGGGGATCGAAGCAAAAAGTCGTTAGAGAGACTTGCAGGGGAAACAACTAGGACATCAGAGGAATCCAATTATGAAGGTGAATCAGGGTCCTTCCCCAGGGTATCTCAAGAGTTGAAGGATGCTTTGTCAACCCTGCAGCAGACTTTCGTTGTTTCAGATGCTACCAAACCAGACTGCCCCATTATGTTTGCCAGCAGTGGGTTTTTTAGCATGACTGGTTACACTTCCAAGGAGGTCATTGGAAGGAACTGCCGCTTTCTTCAGGGACCAGATACAGACGAGAACGAAGTTGCCAAAATACGAAATTCTGTCAAAACTGGGAATAGCTACTGTGGCAGGCTCTTGAATTACAAGAAGGATGGCACTCCTTTCTGGAATCTTCTAACCATCACCCCCATTAAAGATGACAAGGGGAATGTCATCAAATTCATTGGAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATGCTCGTCAGAAGGAGAAGGCTTTGGGCTCGATCACAGAAGTTGTTCAAACCGTGAAGCATCCCCATTCTCATGCTCATGCTCGAACTATGAGTCATGATGGTACAGTCAAGAATGAAGAGGTGGAAAAGTTCCACCTTGATTATCTTCTGCCTAAATCTGCTGAGCTTGACAACATAAGCACACCTGGTAGACAAACTCCTCAAGTGGATTCCAGAAATATCTCCCGCTCTGGTTCTCGTCAGGAAGCTGGCAAGAAATCTAGAAAATCGGCACGGATTTCTTTAATGGGGTTTAAATCAAAATCTATAAGTTCCTTTAGTGCACAAGAGTGTCAGCCAAGTATTGAGCCAGAGATTTTGATGACTAAAGACATAGAACGCTCTGACAGTTGGGAACGTGCTGAAAGAGAAAGGGATATACGTCAAGGAATTGACTTAGCAACCACTCTAGAGCGCATTGAAAAGAATTTTGTGATAACCGATCCAAGACTTCCTGATAACCCAATTATATTTGCCTCTGACAGCTTTCTTGAATTAACAGAGTATACTCGTGAAGAAATATTGGGAAGAAATTGTCGATTTCTTCAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGGAAAGAAATTCTGGAATTTATTCCACTTGCAGCCCATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTAAGCTGGTCAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATCCACTCTCAACCTGTCTTCCCAAAGCCTCACAAGAAGAATAACTCTTCTTGGATAGCAATACAAAAGATTACTGCCCGCGAAAAAATTGGCCTAAGTCATTTCAATCCTATAAGGCCATTGGGTTGTGGTGATACTGGCAGTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATTTCAATGCTCGATCATCCGTTCCTTCCAACGCTGTACTCTTCTTTTCAGACTCCTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGCCCTGCTTGACAAGCAACCCATGAAAATATTTAGAGAGGAATCTGCAAGGTTCTATGCTGCAGAGGTCGTGATTGGCTTGGAATATCTTCACTGTTTAGGAATAATTTATCGAGATTTGAAGCCTGAAAACGTGATACTGCAAAAGGATGGACATGTTGTCTTAGCTGACTTTGATCTATCACTGATGACATCCTGTAAACCTCAAATCATAAAGCATCCTCCATCTAAGAGAAGAAGATCCAAGAGTCAACCGCCACCAACATTCGTTGCAGAACCAGACACACAATCAAATTCTTTTGTTGGAACTGAAGAATACATTGCTCCGGAAATTATTACAGGCGCAGGCCACAGTAGTGCCATTGATTGGTGGGCTCTAGGGATTTTTCTGTATGAGATGCTTTATGGCCGTACTCCTTTCAGAGGAAAGAATAGGCAGAAGACATTTTCCAACATCTTGCACAAAGATCTGACTTTTCCCAGTAGCATTCCGGTAAGTCTTGCTGCTAGGCAGTTGATTCATGCGTTGTTGAACAGGGATCCTGCCAGCCGATTAGGATCAACCAGCGGTGCTAATGAAATCAAACAACATCTATTTTTCCGTGGAATTAACTGGCCTTTGATCCGCTGCATGAACCCACCACCACTGGATGTGCCTCTTGAGTTAATTGGGAAAGAGTCCAAGGCCAAAGATGCACAGTGGGATGATGAGGGAGCGCTTGCTCATTCTATGGAAGTTTTCTAG | 2940 | 44.08 | MEKSGAWSSSPSTSSSVKEYQSTGSIIDGKQTLEVFEPARSQDLEQLRTDYKGDNEDIAASAQVVEQGGSSREPINKWMAFQREASGKSNVTDNSITASTIAERTAEWGLVMKSDLGDGLRALGRSFGEGDRSKKSLERLAGETTRTSEESNYEGESGSFPRVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTDENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPIKDDKGNVIKFIGMQVEVSKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGSITEVVQTVKHPHSHAHARTMSHDGTVKNEEVEKFHLDYLLPKSAELDNISTPGRQTPQVDSRNISRSGSRQEAGKKSRKSARISLMGFKSKSISSFSAQECQPSIEPEILMTKDIERSDSWERAERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEQTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKNNSSWIAIQKITAREKIGLSHFNPIRPLGCGDTGSVHLVELKGSGELYAMKAMDKSVMLNRNKVHRACMEREIISMLDHPFLPTLYSSFQTPTHVCLITDFFPGGELFALLDKQPMKIFREESARFYAAEVVIGLEYLHCLGIIYRDLKPENVILQKDGHVVLADFDLSLMTSCKPQIIKHPPSKRRRSKSQPPPTFVAEPDTQSNSFVGTEEYIAPEIITGAGHSSAIDWWALGIFLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPVSLAARQLIHALLNRDPASRLGSTSGANEIKQHLFFRGINWPLIRCMNPPPLDVPLELIGKESKAKDAQWDDEGALAHSMEVF* | 980 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3038680 | 3049098 | - | Vvi3g325 | Vvi3g325 | 784000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3g325 | 979 | CDD | PAS | 190 | 279 | IPR000014 | - | |
Vvi3g325 | 979 | CDD | PAS | 461 | 561 | IPR000014 | - | |
Vvi3g325 | 979 | PANTHER | FLIPPASE KINASE 1-RELATED | 380 | 978 | - | - | |
Vvi3g325 | 979 | PANTHER | FLIPPASE KINASE 1-RELATED | 138 | 376 | - | - | |
Vvi3g325 | 979 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 462 | 561 | IPR035965 | - | |
Vvi3g325 | 979 | ProSiteProfiles | Protein kinase domain profile. | 646 | 932 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi3g325 | 979 | Gene3D | Phosphorylase Kinase; domain 1 | 645 | 729 | - | - | |
Vvi3g325 | 979 | ProSitePatterns | Protein kinases ATP-binding region signature. | 652 | 675 | IPR017441 | GO:0005524 | |
Vvi3g325 | 979 | PANTHER | BNAA02G07840D PROTEIN | 138 | 376 | - | - | |
Vvi3g325 | 979 | PANTHER | BNAA02G07840D PROTEIN | 380 | 978 | - | - | |
Vvi3g325 | 979 | MobiDBLite | consensus disorder prediction | 127 | 145 | - | - | |
Vvi3g325 | 979 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 767 | 779 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi3g325 | 979 | MobiDBLite | consensus disorder prediction | 127 | 160 | - | - | |
Vvi3g325 | 979 | MobiDBLite | consensus disorder prediction | 802 | 827 | - | - | |
Vvi3g325 | 979 | Gene3D | Transferase(Phosphotransferase) domain 1 | 730 | 941 | - | - | |
Vvi3g325 | 979 | ProSiteProfiles | PAC domain profile. | 237 | 291 | IPR000700 | - | |
Vvi3g325 | 979 | CDD | STKc_phototropin_like | 644 | 955 | - | - | |
Vvi3g325 | 979 | SMART | pac_2 | 240 | 282 | IPR001610 | - | |
Vvi3g325 | 979 | SMART | pac_2 | 523 | 565 | IPR001610 | - | |
Vvi3g325 | 979 | ProSiteProfiles | PAS repeat profile. | 163 | 236 | IPR000014 | - | |
Vvi3g325 | 979 | SMART | pas_2 | 165 | 234 | IPR000014 | - | |
Vvi3g325 | 979 | SMART | pas_2 | 448 | 517 | IPR000014 | - | |
Vvi3g325 | 979 | Pfam | Protein kinase domain | 648 | 932 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi3g325 | 979 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vvi3g325 | 979 | ProSiteProfiles | PAC domain profile. | 520 | 574 | IPR000700 | - | |
Vvi3g325 | 979 | SMART | serkin_6 | 646 | 932 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi3g325 | 979 | MobiDBLite | consensus disorder prediction | 362 | 382 | - | - | |
Vvi3g325 | 979 | Coils | Coil | 570 | 590 | - | - | |
Vvi3g325 | 979 | TIGRFAM | sensory_box: PAS domain S-box protein | 190 | 280 | IPR000014 | - | |
Vvi3g325 | 979 | TIGRFAM | sensory_box: PAS domain S-box protein | 471 | 561 | IPR000014 | - | |
Vvi3g325 | 979 | MobiDBLite | consensus disorder prediction | 360 | 395 | - | - | |
Vvi3g325 | 979 | SUPERFAMILY | Protein kinase-like (PK-like) | 630 | 953 | IPR011009 | - | |
Vvi3g325 | 979 | ProSiteProfiles | PAS repeat profile. | 446 | 519 | IPR000014 | - | |
Vvi3g325 | 979 | Gene3D | PAS domain | 177 | 345 | - | - | |
Vvi3g325 | 979 | Gene3D | PAS domain | 435 | 599 | - | - | |
Vvi3g325 | 979 | Pfam | PAS domain | 469 | 561 | IPR000014 | - | |
Vvi3g325 | 979 | Pfam | PAS domain | 184 | 280 | IPR000014 | - | |
Vvi3g325 | 979 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 184 | 276 | IPR035965 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76570 | PF00069 | Pkinase | 4.20E-59 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi3g325 | K20715 | - | vvi:100241765 | 1928.68 |