Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g325 ATGGAGAAATCAGGGGCATGGAGTTCTAGTCCCTCAACTTCCTCATCAGTAAAAGAGTATCAATCCACCGGTAGTATTATAGATGGGAAGCAGACATTGGAGGTGTTTGAACCGGCACGGAGCCAGGATTTAGAACAGCTGCGTACTGATTATAAGGGTGACAATGAAGATATAGCAGCATCGGCACAAGTAGTAGAGCAGGGAGGCTCTAGTAGGGAGCCTATCAACAAGTGGATGGCATTTCAGAGGGAGGCTTCTGGGAAGTCTAACGTCACTGATAATTCCATTACAGCAAGCACAATAGCTGAAAGAACTGCAGAATGGGGGCTGGTTATGAAATCGGATTTGGGAGACGGTCTGCGAGCATTGGGAAGGTCATTTGGAGAAGGGGATCGAAGCAAAAAGTCGTTAGAGAGACTTGCAGGGGAAACAACTAGGACATCAGAGGAATCCAATTATGAAGGTGAATCAGGGTCCTTCCCCAGGGTATCTCAAGAGTTGAAGGATGCTTTGTCAACCCTGCAGCAGACTTTCGTTGTTTCAGATGCTACCAAACCAGACTGCCCCATTATGTTTGCCAGCAGTGGGTTTTTTAGCATGACTGGTTACACTTCCAAGGAGGTCATTGGAAGGAACTGCCGCTTTCTTCAGGGACCAGATACAGACGAGAACGAAGTTGCCAAAATACGAAATTCTGTCAAAACTGGGAATAGCTACTGTGGCAGGCTCTTGAATTACAAGAAGGATGGCACTCCTTTCTGGAATCTTCTAACCATCACCCCCATTAAAGATGACAAGGGGAATGTCATCAAATTCATTGGAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATGCTCGTCAGAAGGAGAAGGCTTTGGGCTCGATCACAGAAGTTGTTCAAACCGTGAAGCATCCCCATTCTCATGCTCATGCTCGAACTATGAGTCATGATGGTACAGTCAAGAATGAAGAGGTGGAAAAGTTCCACCTTGATTATCTTCTGCCTAAATCTGCTGAGCTTGACAACATAAGCACACCTGGTAGACAAACTCCTCAAGTGGATTCCAGAAATATCTCCCGCTCTGGTTCTCGTCAGGAAGCTGGCAAGAAATCTAGAAAATCGGCACGGATTTCTTTAATGGGGTTTAAATCAAAATCTATAAGTTCCTTTAGTGCACAAGAGTGTCAGCCAAGTATTGAGCCAGAGATTTTGATGACTAAAGACATAGAACGCTCTGACAGTTGGGAACGTGCTGAAAGAGAAAGGGATATACGTCAAGGAATTGACTTAGCAACCACTCTAGAGCGCATTGAAAAGAATTTTGTGATAACCGATCCAAGACTTCCTGATAACCCAATTATATTTGCCTCTGACAGCTTTCTTGAATTAACAGAGTATACTCGTGAAGAAATATTGGGAAGAAATTGTCGATTTCTTCAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGGAAAGAAATTCTGGAATTTATTCCACTTGCAGCCCATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTAAGCTGGTCAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATCCACTCTCAACCTGTCTTCCCAAAGCCTCACAAGAAGAATAACTCTTCTTGGATAGCAATACAAAAGATTACTGCCCGCGAAAAAATTGGCCTAAGTCATTTCAATCCTATAAGGCCATTGGGTTGTGGTGATACTGGCAGTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATTTCAATGCTCGATCATCCGTTCCTTCCAACGCTGTACTCTTCTTTTCAGACTCCTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGCCCTGCTTGACAAGCAACCCATGAAAATATTTAGAGAGGAATCTGCAAGGTTCTATGCTGCAGAGGTCGTGATTGGCTTGGAATATCTTCACTGTTTAGGAATAATTTATCGAGATTTGAAGCCTGAAAACGTGATACTGCAAAAGGATGGACATGTTGTCTTAGCTGACTTTGATCTATCACTGATGACATCCTGTAAACCTCAAATCATAAAGCATCCTCCATCTAAGAGAAGAAGATCCAAGAGTCAACCGCCACCAACATTCGTTGCAGAACCAGACACACAATCAAATTCTTTTGTTGGAACTGAAGAATACATTGCTCCGGAAATTATTACAGGCGCAGGCCACAGTAGTGCCATTGATTGGTGGGCTCTAGGGATTTTTCTGTATGAGATGCTTTATGGCCGTACTCCTTTCAGAGGAAAGAATAGGCAGAAGACATTTTCCAACATCTTGCACAAAGATCTGACTTTTCCCAGTAGCATTCCGGTAAGTCTTGCTGCTAGGCAGTTGATTCATGCGTTGTTGAACAGGGATCCTGCCAGCCGATTAGGATCAACCAGCGGTGCTAATGAAATCAAACAACATCTATTTTTCCGTGGAATTAACTGGCCTTTGATCCGCTGCATGAACCCACCACCACTGGATGTGCCTCTTGAGTTAATTGGGAAAGAGTCCAAGGCCAAAGATGCACAGTGGGATGATGAGGGAGCGCTTGCTCATTCTATGGAAGTTTTCTAG 2940 44.08 MEKSGAWSSSPSTSSSVKEYQSTGSIIDGKQTLEVFEPARSQDLEQLRTDYKGDNEDIAASAQVVEQGGSSREPINKWMAFQREASGKSNVTDNSITASTIAERTAEWGLVMKSDLGDGLRALGRSFGEGDRSKKSLERLAGETTRTSEESNYEGESGSFPRVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTDENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPIKDDKGNVIKFIGMQVEVSKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGSITEVVQTVKHPHSHAHARTMSHDGTVKNEEVEKFHLDYLLPKSAELDNISTPGRQTPQVDSRNISRSGSRQEAGKKSRKSARISLMGFKSKSISSFSAQECQPSIEPEILMTKDIERSDSWERAERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEQTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKNNSSWIAIQKITAREKIGLSHFNPIRPLGCGDTGSVHLVELKGSGELYAMKAMDKSVMLNRNKVHRACMEREIISMLDHPFLPTLYSSFQTPTHVCLITDFFPGGELFALLDKQPMKIFREESARFYAAEVVIGLEYLHCLGIIYRDLKPENVILQKDGHVVLADFDLSLMTSCKPQIIKHPPSKRRRSKSQPPPTFVAEPDTQSNSFVGTEEYIAPEIITGAGHSSAIDWWALGIFLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPVSLAARQLIHALLNRDPASRLGSTSGANEIKQHLFFRGINWPLIRCMNPPPLDVPLELIGKESKAKDAQWDDEGALAHSMEVF* 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3038680 3049098 - Vvi3g325 Vvi3g325 784000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g325 979 CDD PAS 190 279 IPR000014 -
Vvi3g325 979 CDD PAS 461 561 IPR000014 -
Vvi3g325 979 PANTHER FLIPPASE KINASE 1-RELATED 380 978 - -
Vvi3g325 979 PANTHER FLIPPASE KINASE 1-RELATED 138 376 - -
Vvi3g325 979 SUPERFAMILY PYP-like sensor domain (PAS domain) 462 561 IPR035965 -
Vvi3g325 979 ProSiteProfiles Protein kinase domain profile. 646 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g325 979 Gene3D Phosphorylase Kinase; domain 1 645 729 - -
Vvi3g325 979 ProSitePatterns Protein kinases ATP-binding region signature. 652 675 IPR017441 GO:0005524
Vvi3g325 979 PANTHER BNAA02G07840D PROTEIN 138 376 - -
Vvi3g325 979 PANTHER BNAA02G07840D PROTEIN 380 978 - -
Vvi3g325 979 MobiDBLite consensus disorder prediction 127 145 - -
Vvi3g325 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Vvi3g325 979 MobiDBLite consensus disorder prediction 127 160 - -
Vvi3g325 979 MobiDBLite consensus disorder prediction 802 827 - -
Vvi3g325 979 Gene3D Transferase(Phosphotransferase) domain 1 730 941 - -
Vvi3g325 979 ProSiteProfiles PAC domain profile. 237 291 IPR000700 -
Vvi3g325 979 CDD STKc_phototropin_like 644 955 - -
Vvi3g325 979 SMART pac_2 240 282 IPR001610 -
Vvi3g325 979 SMART pac_2 523 565 IPR001610 -
Vvi3g325 979 ProSiteProfiles PAS repeat profile. 163 236 IPR000014 -
Vvi3g325 979 SMART pas_2 165 234 IPR000014 -
Vvi3g325 979 SMART pas_2 448 517 IPR000014 -
Vvi3g325 979 Pfam Protein kinase domain 648 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g325 979 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g325 979 ProSiteProfiles PAC domain profile. 520 574 IPR000700 -
Vvi3g325 979 SMART serkin_6 646 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g325 979 MobiDBLite consensus disorder prediction 362 382 - -
Vvi3g325 979 Coils Coil 570 590 - -
Vvi3g325 979 TIGRFAM sensory_box: PAS domain S-box protein 190 280 IPR000014 -
Vvi3g325 979 TIGRFAM sensory_box: PAS domain S-box protein 471 561 IPR000014 -
Vvi3g325 979 MobiDBLite consensus disorder prediction 360 395 - -
Vvi3g325 979 SUPERFAMILY Protein kinase-like (PK-like) 630 953 IPR011009 -
Vvi3g325 979 ProSiteProfiles PAS repeat profile. 446 519 IPR000014 -
Vvi3g325 979 Gene3D PAS domain 177 345 - -
Vvi3g325 979 Gene3D PAS domain 435 599 - -
Vvi3g325 979 Pfam PAS domain 469 561 IPR000014 -
Vvi3g325 979 Pfam PAS domain 184 280 IPR000014 -
Vvi3g325 979 SUPERFAMILY PYP-like sensor domain (PAS domain) 184 276 IPR035965 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76570 PF00069 Pkinase 4.20E-59 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g325 K20715 - vvi:100241765 1928.68