Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g328 ATGAAGCCACATAGGATTAGAATGACACATGCTCTCCTAGCCCACTATGGATTGCTTCAACATATGCAGGTTCTGAAGCCGGGTATCACCCCTGAAACGCAGCAGGATCAGCTGAGGCAACTAAAGCTTGGTGGTGCGGCTTCTGGATTTTGTTACGTGAATGATATTGTCCTGGCAATCTTGGAGCTTCTTAAACAACATGAGCGTGTTTTGTACGTGGATATCGATATCCATCATGGAGATGGTGTGGAGGAGGCTTTCTACACAACTGACAGGGTGATGACTGTTTCATTTCATAAATTTGGTGATTATTTTCCTGGTACAGGGGATATTCGTGATATTGGATTTGGGAAAGGAAAATATTACTCCCTTAACGTTCCATTAGATGATGGGATTGACGACGAGAGCTACCATTTCTTGTTCAAACCAATAATTGGGAAAGTGATGGAGGTTTTTAGGCCTGGTGCTGTGGTTCTTCAGTGTGGTGCTGACTCCTTATCTGGGGACAGGTTAGGATGCTTCAATCTTTCAATCAAAGGCCATGCAGAGTGCGTTCGGTATATGAGATCATTCAATGTGCCACTATTGCTGCTGGGTGGTGGTGGTTATACCATCAGAAATGTTGCTCGTTGCTGGTGCTATGAGACGGGTGTTGCCCTTGGGATTGAAGTTGATGACAAGATGCCACAACATGAGTACTATGAGTACTTTGGTCCAGACTATACTCTTCATGTTGCCCCTAGTAACATGGAAAATAAAAATTCACACCAAATACTGGATGAAATAAGGGCTAAGCTTCTTGATAATCTGTCAAAACTTCGACATGCACCCAGCGTCCAGTTTCAAGAGAGACCCCCAGATACCGAGCTCCCAGAGGCAGATGAAGACCACGATGATGGAGATGAGAGATGGGATCCAGAGTCCGACATGGAAGTTGATGAAGAGCATAAGCCTCTACCAAGCAGAGTAAAGAGAGAAATTGTGGAACCTGAGGCTAAAGATTCGGACGACAAGAAAGGAGTTGCAGAGCACTCTAGAGGCTTTGATACAGCTGCAGAGGAGACTGCTTGCTCAAAGGCTTCAGATGTGTGTCCTATGCCAATAGATGAACCAAATGTGAAAGTTGAACAAGAGAACTTGAACAAGCCATTTGATCAGCCTGTCCAGATGTACCCAAAGCCATGA 1185 44.81 MKPHRIRMTHALLAHYGLLQHMQVLKPGITPETQQDQLRQLKLGGAASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGFGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHQILDEIRAKLLDNLSKLRHAPSVQFQERPPDTELPEADEDHDDGDERWDPESDMEVDEEHKPLPSRVKREIVEPEAKDSDDKKGVAEHSRGFDTAAEETACSKASDVCPMPIDEPNVKVEQENLNKPFDQPVQMYPKP* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3061224 3067402 + Vvi3g328 Vvi3g328 784003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g328 394 PIRSF HDAC_I_euk 1 43 IPR003084 GO:0004407|GO:0016575
Vvi3g328 394 PIRSF HDAC_I_euk 42 356 IPR003084 GO:0004407|GO:0016575
Vvi3g328 394 SUPERFAMILY Arginase/deacetylase 1 273 IPR023696 -
Vvi3g328 394 MobiDBLite consensus disorder prediction 276 353 - -
Vvi3g328 394 MobiDBLite consensus disorder prediction 310 350 - -
Vvi3g328 394 PANTHER HISTONE DEACETYLASE 46 385 - -
Vvi3g328 394 PANTHER HISTONE DEACETYLASE 1 27 - -
Vvi3g328 394 MobiDBLite consensus disorder prediction 292 309 - -
Vvi3g328 394 Pfam Histone deacetylase domain 46 216 IPR023801 -
Vvi3g328 394 Gene3D Histone deacetylase domain 43 285 IPR037138 -
Vvi3g328 394 PRINTS Histone deacetylase superfamily signature 37 60 IPR000286 -
Vvi3g328 394 PRINTS Histone deacetylase superfamily signature 69 84 IPR000286 -
Vvi3g328 394 PRINTS Histone deacetylase superfamily signature 154 164 IPR000286 -
Vvi3g328 394 PANTHER HISTONE DEACETYLASE 19 1 27 - -
Vvi3g328 394 PANTHER HISTONE DEACETYLASE 19 46 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g328 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - vvi:100241833 769.615
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99