Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g33 ATGACATGGCAAGTCCATATTGAATGCAACATTAAAGAAATTGCTGATGAAGATGAACCCCCACCAAAAAGTTCCAAAAATAAAAAGGAAAATGGACCAGAGAAATCACCGAGTCTTGTCTTCAAAATAACCAGAAAAGTTCCATATAAGACAGTTCTGAAAGTTCACAGTGCTGTTATGTTAAAGGCTGAGAGCATAGCGGATAAGGCTGAGTGGTTAAACAAATTGAGAAATGTTATTCAGCCTTCAGGTCAAGTGAAGGGTGAATCTGGTCTTACCATGCGACAAAGTCTTTCTGATGGTTCTCTTGATACAATGGCCAGAAGAACTACAGATCCAGAAGAAGAGCTCCGTTGGATGTCTCAAGAAGTGCGTGGTTATGTTGAAGCTGTTCTGAACAGCCTTGCTGCCAATGTCCCAAAAGCAGTTGTCCTTTGCCAAGTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCATGTTGGTACTCTTTGCCATATGGAAACACACAATTCTCTAA 531 39.92 MTWQVHIECNIKEIADEDEPPPKSSKNKKENGPEKSPSLVFKITRKVPYKTVLKVHSAVMLKAESIADKAEWLNKLRNVIQPSGQVKGESGLTMRQSLSDGSLDTMARRTTDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSVMLVLFAIWKHTIL* 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 503105 504318 + Vvi3g33 Vvi3g33 783708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g33 176 MobiDBLite consensus disorder prediction 14 35 - -
Vvi3g33 176 ProSiteProfiles PH domain profile. 1 81 IPR001849 -
Vvi3g33 176 ProSiteProfiles GED domain profile. 117 176 IPR020850 -
Vvi3g33 176 Pfam Dynamin GTPase effector domain 115 163 IPR003130 GO:0003924|GO:0005525
Vvi3g33 176 MobiDBLite consensus disorder prediction 90 106 - -
Vvi3g33 176 MobiDBLite consensus disorder prediction 14 37 - -
Vvi3g33 176 PANTHER DYNAMIN-2A 8 163 - -
Vvi3g33 176 MobiDBLite consensus disorder prediction 90 113 - -
Vvi3g33 176 Gene3D Dynamin, middle domain 38 166 - -
Vvi3g33 176 PANTHER DYNAMIN 8 163 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g33 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - vvi:100245514 273.863
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .