Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g330 ATGGAGGCCAGTGCTGGTTTAGTGGCTGGTTCTCACAACCGGAACGAGCTTGTGGTCATCCGTCGTGAGGGAGAAGCTGCCGGTCGGAAGCCATTGGCGAATCTAAGTGGGCAAACATGCCAGATTTGTGGGGATGATGTTGGACTTACTGCGGAGGGAGAGTTGTTTGTGGCCTGCAATGAGTGCGCATTTCCGATTTGCAGGACTTGTTATGAGTACGAGCGCAGCGAAGGAAACCAGGTCTGCCCTCAGTGCAAGACTCGCTTCAAACGTCTCAAGGGATGTGCTAGAGTTGAAGGCGATGAAGAAGAAGATGATGTTGATGACTTGGAGAATGAGTTCAATTTCGTGGGGAGAAGGAGGGATACCCAAGATATGCAGTACATTGCAGAGGGCATGCTTCAGGGCCACATGACTTATGGCCGTGCTGGGGATGCTGACATGCTTCCTCAAGTTGTCAACACCATGCCTACGGTTCCTCTGCTAACCAACGGCCAAATGGTTGATGATATTCCTCCTGAGCACCATGCTTTGGTTCCTTCTTTTCTTGGTGGCGGAGGCAAAAGAATCCACCCTCTTCCTTTCTCTGACCCAGCCTTCCCTGTACAACCTAGGTCCATGGATCCTTCCAAGGACTTGGCTGCTTATGGCTATGGAAGTGTGGCTTGGAAGGAGAGGATGGAAAATTGGAAGCAGAAGCAAGAGAAGCTACAGGTGATGAACGAAAATGGTGGGAAAGATTGGGACAACGATGGGGATGGGCCAGATCTACCCCTGATGGATGAGGCAAGGCAACCATTATCAAGGAAGCTACCTGTTCCATCAAGCCAAATTAATCCATATCGAATGATAATTATAATCCGGCTTGTAGTTCTCGGGTTCTTCTTCCATTATCGGGTCATGCATCCTGTAAATGATGCTTATGCACTGTGGCTTGTATCTGTGATCTGTGAGATTTGGTTTGCCATTTCATGGATTCTTGATCAGTTTCCAAAATGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGCTGTCATTGAGGTATGATAAGGAAGGTCAACCTTCTCAACTTTCTTCAGTTGATATATTTGTCAGTACTGTGGATCCTTTAAAAGAGCCGCCTTTGGTTACTGCAAACACGGTGTTGTCCATTCTGGCTGTGGACTACCCAGTTGACAAGGTTTCCTGTTATGTTTCTGATGATGGTGCTGCCATGTTGACATTTGAAGCCTTGTCTGAAACATCCGAATTTGCGAGAAAGTGGGTGCCTTTCTGCAAGAAATTCAACATTGAGCCACGTGCACCAGAGTTTTATTTTGCTCAGAAGATAGATTATCTTCAGGATAAGGTTTTAACTTCATTTGTTAAGGACCGAAGGGCTATGAAGAGAGAGTATGAGGAATTTAAAGTTCGGATTAATGCCTTGGTTGCCAAAGCTCAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACGCCTTGGCCAGGAAATAATGTCCGTGATCACCCTGGAATGATTCAGGTTTTTCTAGGTCAAAGTGGGGGGCATGACACAGAAGGAAATGAATTACCACGCTTAGTCTATGTGTCCAGAGAAAAGAGACCTGGATTTAATCACCACAAGAAGGCTGGTGCCATGAATGCTCTGGTCCGAGTCTCTGCTGTTCTTACGAATGCACCTTATCTATTGAATTTGGATTGTGATCACTACTTCAACAACAGCAAGGCTCTCAAGGAGGCAATGTGTTTCATGATGGATCCACTGCTGGGAAAGAAAGTGTGCTATGTTCAGTTCCCACAGAGGTTTGATGGGATTGATAGGCATGATCGATATGCTAACCGGAACATTGTATTCTTTGATATCAACATGAAAGGCTTGGACGGAATTCAAGGACCCATTTATGTGGGTACTGGGTGTGTCTTTAGAAGACAGGCATTCTATGGTAATGATGCTCCAAAAACAAAGAAGCCTCCAACAAGGACCTGTAACTGCTGGCCAAACTGGTGCTGTTGTGGTTGCTGTTTCTCTGGAAAGAAGAAAAAGAAAACCACAAAGTCCAAGTCTGAGAAGAAGCAGAAGAAGTTTAGGAGATTGGATTCTGGAGCACCTGTATTTGCTTTAGAGGGCATTGAGGAGGGCATTGAAGGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGGTGGAACACTGAAAATTGCGAGTCCTGCATCTCTATTAAAGGAAGCTATCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAATGCATTGCCATGGATGGCGATCCATATACTGCATCCCTGACAGGCCAGCTTTTAAAGGGTCCGCACCCATCAATCTTTCTGATCGTCTGCACCAGGTGCTTCGATGGGCCCTTGGTTCCGTTGAAATTTTCTTGAGCAGGCACTGTCCCCTCTGGTATGGGTATGGTGGTGGTCTGAAATGGTTAGAACGTCTTTCTTACATCAACGCAACTGTATATCCATGGACATCAATTCCATTGGTCGCTTATTGTACCTTACCTGCTGTTTGCTTGCTCACAGGCAAATTCATCACTCCAGAGCTAAGCAATGTTGCGAGTTTGTGGTTTTTATCCCTTTTTATCTGTATTTTTGCGACTAGCATCCTGGAAATGAGATGGAGTGGTGTTGGAATTGATGATTGGTGTTAG 2808 45.58 MEASAGLVAGSHNRNELVVIRREGEAAGRKPLANLSGQTCQICGDDVGLTAEGELFVACNECAFPICRTCYEYERSEGNQVCPQCKTRFKRLKGCARVEGDEEEDDVDDLENEFNFVGRRRDTQDMQYIAEGMLQGHMTYGRAGDADMLPQVVNTMPTVPLLTNGQMVDDIPPEHHALVPSFLGGGGKRIHPLPFSDPAFPVQPRSMDPSKDLAAYGYGSVAWKERMENWKQKQEKLQVMNENGGKDWDNDGDGPDLPLMDEARQPLSRKLPVPSSQINPYRMIIIIRLVVLGFFFHYRVMHPVNDAYALWLVSVICEIWFAISWILDQFPKWLPIDRETYLDRLSLRYDKEGQPSQLSSVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLQDKVLTSFVKDRRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDTEGNELPRLVYVSREKRPGFNHHKKAGAMNALVRVSAVLTNAPYLLNLDCDHYFNNSKALKEAMCFMMDPLLGKKVCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGNDAPKTKKPPTRTCNCWPNWCCCGCCFSGKKKKKTTKSKSEKKQKKFRRLDSGAPVFALEGIEEGIEGIESEKSTMLSETKLEKKFGQSPVFVASTLLEDGGTLKIASPASLLKEAIHVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPDRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAVCLLTGKFITPELSNVASLWFLSLFICIFATSILEMRWSGVGIDDWC* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3070549 3078772 + Vvi3g330 Vvi3g330 784005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g330 935 Coils Coil 459 479 - -
Vvi3g330 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 113 IPR013083 -
Vvi3g330 935 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 934 - -
Vvi3g330 935 SUPERFAMILY RING/U-box 26 112 - -
Vvi3g330 935 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 855 IPR029044 -
Vvi3g330 935 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Vvi3g330 935 Pfam Cellulose synthase 361 934 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi3g330 935 PANTHER CELLULOSE SYNTHASE 3 934 - -
Vvi3g330 935 Pfam Zinc-binding RING-finger 30 107 IPR027934 -
Vvi3g330 935 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 656 IPR029044 -
Vvi3g330 935 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g330 Vvi18g7 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g330 K10999 - vvi:100264115 1803.1