Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g331 ATGATTGAGGAAGGAAATTTGGCAATCCTGTCCTCCTGCTTTGTGGGTCTCCTCACTGGCATTGGTATTGTGCTCTTCAACAACGCGGTGCATGTAATTCGTGATTTTTCCTGGGATGGGATTCCCTACAGAGGTGCCTCATGGTTGAGAGAGGAGCCCATTGAAGCTATCTGGGAACGAGTAATTCTAGTACCATTATGTGGGGGTTTGCTTGTAAGTGGGTTAAATGTTCTTCGAGATGCTTTGCAGAGCCCTGGAGACGGAAACTTGATTTCTAATATAAAGGCTGCACTTCAACCATTCTTGAAGGCGGTGGCTGCTTGTGTCACCCTTGGTACTGGAAATTCATTGGGGCCTGAAGGTCCTAGCGTTGAGATAGGTGCATCCATCGCCAAGGGTGTTAGTTCTTTGTTTGATAAAAGCTCCAAAAGAAAGGTGTCTCTTGTTGCTGCAGGATCAGCTGCTGGAATCTCTTCTGGGTTCAATGCCGCTTTTGCTGGTTGTTTTTTTGCTGTTGAATCAGTCTTATGGCCCTCAACAGCAGATTCATCCCTATCACTCCAAAATACTACTTCTATGGTTATACTCAGTGCTGTAATAGCATCTGTAGTGTCAGAAGTTGGTCTTGGTTCTGAACCAGCCTTCAAGGTCCCAGAATATGATTTCCGTTCACCTGGTGAACTTCCACTGTATCTTTTGCTGGGTATCCTATGTGGGTTGGTTTCGTTGGCCTTATCTAAGTGCACATCTTACATGTTGGTAACTATTGACAATGTCCATAAGGCTGTTGGCATTCCAAGGGCTGCATTTCCTGTATTGGGTGGCCTATCTGTTGGGCTTATAGCCTTGGCTTATCCTGAAATTCTTTACTGGGGTTTTGAGAATGTTGACATATTGTTGGAATCTCGGCCATTTGTGAAAGGCCTCTCTGCTGATCTATTGCTTCAGCTAGTAGCTGTCAAGATAGTAGCAACTTCCTTGTGCCGGGCCTCTGGATTAGTAGGAGGCTACTATGCTCCATCTCTCTTTATTGGTGCAGCAACAGGAATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCAATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCACTGCTGGGAGCTGTAGGGTTGTCTTCATGGACTACATCTAGGCAGGCTAAAAGAAAGGATGTTGGGGATCCTGGGAAACTTAAAGAGGGAAATGCTCAGAAAACAGATTTATCTTCCCATGACCCCAGTGTGCTCTCTTCTAGTTATTCAGTTGCTGCAAAGGCATCACATGCAAGTAACCTTTGTGAAGTTGAAAGTTCACTCTGTGTTGATGATTCCAATAGTGAGACAAAAGAGCTAGAAAAGAGGATTTTTGTTTCACAAGCCATGAGAACAAGATATGTGACTGTCCTGATGAGTACATTACTTATAGAGGCAGTGAGTCTACTGCTCGAGGAAAAGCAGACGTGTGCAGTAATCGTTGATGATGACCATCTCTTGATCGGTTTACTGACACTTGAAGACATTCAGGAGTTCAGCGAAAGAGAAAAAGCTAGAATCAGGAGATCCAAGGAGGTTTTAGTATCTGAAATGTGTTCTTTGGATGGTGAAAAATGCCGAGTGCCATGGACAGTAACACCAGGCATGAATCTCTTTTCTGCTCAAATGATCATGAACACACTTGGTGTGAATCAACTTCCAGTTATCTCAGATCATGTTGAAGATCACAAAGGGCATCCAGTTGGCCTCTTGGACAGGGAATGCATCAGCCTTGCTTTCAGGGCAGTAGCAGCCAGAGAATACCTGAGCTATGTTTCCACACCAGAAAAGGCATGA 1962 44.65 MIEEGNLAILSSCFVGLLTGIGIVLFNNAVHVIRDFSWDGIPYRGASWLREEPIEAIWERVILVPLCGGLLVSGLNVLRDALQSPGDGNLISNIKAALQPFLKAVAACVTLGTGNSLGPEGPSVEIGASIAKGVSSLFDKSSKRKVSLVAAGSAAGISSGFNAAFAGCFFAVESVLWPSTADSSLSLQNTTSMVILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGILCGLVSLALSKCTSYMLVTIDNVHKAVGIPRAAFPVLGGLSVGLIALAYPEILYWGFENVDILLESRPFVKGLSADLLLQLVAVKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFITFAISQSNPMFHLSILEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWTTSRQAKRKDVGDPGKLKEGNAQKTDLSSHDPSVLSSSYSVAAKASHASNLCEVESSLCVDDSNSETKELEKRIFVSQAMRTRYVTVLMSTLLIEAVSLLLEEKQTCAVIVDDDHLLIGLLTLEDIQEFSEREKARIRRSKEVLVSEMCSLDGEKCRVPWTVTPGMNLFSAQMIMNTLGVNQLPVISDHVEDHKGHPVGLLDRECISLAFRAVAAREYLSYVSTPEKA* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3078819 3096034 - Vvi3g331 Vvi3g331 784006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g331 653 Gene3D - 485 633 IPR046342 -
Vvi3g331 653 MobiDBLite consensus disorder prediction 431 450 - -
Vvi3g331 653 Pfam Voltage gated chloride channel 100 427 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g331 653 ProSiteProfiles CBS domain profile. 505 561 IPR000644 -
Vvi3g331 653 MobiDBLite consensus disorder prediction 431 458 - -
Vvi3g331 653 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 5 642 - -
Vvi3g331 653 PRINTS Chloride channel signature 103 122 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g331 653 PRINTS Chloride channel signature 154 173 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g331 653 PRINTS Chloride channel signature 333 353 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g331 653 PRINTS Chloride channel signature 378 394 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g331 653 PRINTS Chloride channel signature 396 415 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi3g331 653 SMART cbs_1 583 636 IPR000644 -
Vvi3g331 653 SMART cbs_1 508 556 IPR000644 -
Vvi3g331 653 CDD Voltage_gated_ClC 16 424 - -
Vvi3g331 653 SUPERFAMILY Clc chloride channel 9 429 IPR014743 -
Vvi3g331 653 Pfam CBS domain 501 554 IPR000644 -
Vvi3g331 653 Gene3D Clc chloride channel 3 438 - -
Vvi3g331 653 SUPERFAMILY CBS-domain pair 497 629 IPR046342 -
Vvi3g331 653 CDD CBS_pair_voltage-gated_CLC_euk_bac 505 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g331 - - - vvi:100253731 1182.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33