Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g335 ATGATTGAGTTGTTAATCATGTTTATCTTGAGGAAACTGTCTGTTGGACTTCTTACAAATGATCCAGCGGACATTGCAGTAGATCCTGAAGAAGATCAAAAAGAAGGTGGAGAAGAATGTGAGCATTCTTTTGTTCTAAAGGATGATATCGGTTCTGTTTGTCACATCTGTGGACTTGTAGACAAGAGTATTGAATCCATAATTGAGTACAAGTATCCTAAGGTTAAAAGATCTAAAAGTCACATACATGAACATTGCTATACCAAAGATGGAAAACCAACTGATGACCACTCAGATGGGCTTAGATTTTCTGAAAATGATTCAAGTGTAACTGTGATCCACGCTCATCCAAGGCACGGCAGGCAAATGAAACCCCATCAAGTGGAGGGCTTCAATTTTCTAGTAAGCAACTTGGTAGCAGATGATCCAGGGGGTTGCATTCTGGCTAATGCTCCAGGATCTGGGAAAACTTTCATGATCATTAGTTTCATGCAAAGTTTCCTGACCAAACATCCTGAAGTCAGATCTCTTGTTGTACTTCCCAAGAGTATTTTGGCAACATGGAAGAAAGAGTTTCTGACTTGGCAAGTTGAGGATATTCCACTGTATGACTTCTACTCAGTAAAGGCAGATAGGCCGTCTCAGCAGCTAGATGTGTTGAAACAGTGGGTGGTGGAGAAGAGCATCCTGTTTTTAGGACATACACAGTTCACTGCAATTGTTTCTGGTGATGGAGCTTCTGAGGCAGAACTTACCTGTCAAGAAATTTCTGAAGTTGAAAACTTCCCATGCTTTGTTAAGCTCATAATGAGCAAGATGGACATCATGAGTGTGAGGAATCAGATGAAATCCAGTCATGCAGATGCTTTCTATAGTGTGGTGGAGACCACTCTCCAAAAGGATGACAATTTCTGGAGGAAAATAACTTTAATACAAGATCTCCGTGAGCTGCCTGGCCTTTTTGAGTTCACAGTTCTCCTCGATCTAAGTTCCAGACAGAAGCAGGAAATTGAAAATTTGAAAGTGTACGAGAGAGTAAGTTCAAGAGAAATTGTGTTGGGAGTGCTGTTTATGTACACCCACAGTTGA 1089 40.86 MIELLIMFILRKLSVGLLTNDPADIAVDPEEDQKEGGEECEHSFVLKDDIGSVCHICGLVDKSIESIIEYKYPKVKRSKSHIHEHCYTKDGKPTDDHSDGLRFSENDSSVTVIHAHPRHGRQMKPHQVEGFNFLVSNLVADDPGGCILANAPGSGKTFMIISFMQSFLTKHPEVRSLVVLPKSILATWKKEFLTWQVEDIPLYDFYSVKADRPSQQLDVLKQWVVEKSILFLGHTQFTAIVSGDGASEAELTCQEISEVENFPCFVKLIMSKMDIMSVRNQMKSSHADAFYSVVETTLQKDDNFWRKITLIQDLRELPGLFEFTVLLDLSSRQKQEIENLKVYERVSSREIVLGVLFMYTHS* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3116925 3136608 - Vvi3g335 Vvi3g335 784010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g335 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 213 IPR027417 -
Vvi3g335 362 PANTHER PROTEIN CHROMATIN REMODELING 35 271 345 - -
Vvi3g335 362 PANTHER PROTEIN CHROMATIN REMODELING 35 31 256 - -
Vvi3g335 362 Pfam SNF2-related domain 141 212 IPR000330 GO:0005524|GO:0140658
Vvi3g335 362 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 271 345 IPR044567 GO:0080188
Vvi3g335 362 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 31 256 IPR044567 GO:0080188
Vvi3g335 362 Gene3D - 92 249 IPR038718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g335 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - vvi:100243495 477.633
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g335 . Blo15g00756 Bda06g01081 . . . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . . . . . . . . . . . . . . . . . . . . . Lsi10g00400 . Chy11g00351 . . . . . . . . . . Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01968 . . . Hepe08g0991 . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14646 PF00176 SNF2_N 5.10E-07 CL0023 Vvi TR