Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g336 ATGGTAGGGGCGGGGGGAATAGGGTGCGAGCTTCTCAAGACTCTAGCCCTTTCTGGGTTTGAAGATATTCATATTATTGACATGGACACTATAGAAGTGAGTAACCTTAATAGACAGTTTTTATTTCGGCAATCACATGTTGGGCAATCGAAGGCCAAGGTTGCTCGGGATGCAGTCTTAAGATTTAGGCCTCATATAAGCATTACGTCATATCATGCAAATGTCAAGGACCCTGACTTCAATGTGGACTTCTTTAAGCAATTTAATGTTGTTCTCAATGGTCTTGACAATTTAGACGCGAGGCGACATGTGAACCGCCTTTGCTTGGCATCTGATGTACCTTTGGTTGAAAGTGGAACAACTGGGTTCCTTGGACAGGTTACTGTACATGTGAAGGGTAAAACAGAGTGCTATGAGTGCCAGCCAAAGCCCACTCCAAAGACATATCCCGTCTGTACTATTACTAGTACCCCATCCAAGTTTGTACATTGCATTGTATGGGCAAAAGACCTACTTTTTGCGAAGTTATTTGGAGACAAGAATCAGGAAAATGACCTAAATGCGCGTTCTAGTAATGCTGCCAGCTCATCACAGCAAGCAGAGGATGTTTTTGAACGTCAAAATGATGAAGGCATTGATGAATATGCAAAGCGAATATATGATCATGTGTTTGGTTATAACATTGGAGTTGCTTTATCTAATGAAGAGACTTGGAAAAACCGTAATAGACCAAAGCCCTTATATAGCAGAGATGTCTTTCCTGAGGAACCAAGTCAACAGAATGGAAATATGGATAAAAATTGTGCAACTGATGATCCATTATCAGTGTCTGCCATGGCATCTCTGGGTCTGAAGAATCCACAGGATATATGGAGCCTCCTAGAAAATTCAAGAATCTTTCTTGAGGCTCTCAAACTATTTTTTGGGAAGAGAGAGAAGGAGATCGGAAACCTGAGTTTCGATAAAGATGATCAGTTGGCTGTAGAATTTGTTACTGCTGCAGCGAATATCCGTGCTGCTTCTTTTGGGATTCCATTGCATAGCCTTTTTGAAGCAAAAGGTATCGCTGGGAATATTGTGCACGCTGTTGCAACAACAAATGCTGTTATTGCTGGCTTGATTGTGATTGAGGCAATTAAGGTGCTGCAAAGGGATGCAAACAACTACAGGATGACATATTGTCTTGAACATCCATCGAGAAAGATGCTTCTTATGCCAGTGGAACCATTTGAACCTAACAAATCCTGCTATGTTTGTTCTGAGACACCTTTATTGCTCGAAGTTAATACTCACCGCTCAAAGTTACGGGACTTCGTTGAAAAGATTGTTAAGGCCAAGCTTGGCATGAATTGTCCATTGATTATGCATGGACCAGCTCTTCTTTATGAAGTTGGTGATGATCTTGATAAAGATATGGCAGCCAATTATGCTGCAAACCTTGAGAAGGTGCTATCTGAGCTTCCTTCTCCAGTTACTGGTGGGACTATGCTCACAGTTGAAGACCTTCAACAGGAGTTTACATGCAATATTAATATTAAGCATAGAGAGGAATTTGATGAGGAGAAGGAGCCTGATGGCATGCTACTTTCTGGATGGACACAAGCTCCTAGAGTAGAAAAGGATGACAATAAGACTGTGGGCAACGGTGGGAGCAGTACATCGAATGCATCGTCTGCAATGCCAGTGGAGGCTGAAGAGGATGATGACATAGAGTTCGTTCCCACTGGGAAGAAAAGAAAAGTGGGTGAGATTTCCAAGGCCACCAATCCAAATCTTTCTGATGTTGCTGATGATGATGTTCTTGTCATGCTTGATGGTGAGAATTTGGACATCAACAAGAAGAAAAAGTTGCAATAG 1857 41.95 MVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLASDVPLVESGTTGFLGQVTVHVKGKTECYECQPKPTPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNARSSNAASSSQQAEDVFERQNDEGIDEYAKRIYDHVFGYNIGVALSNEETWKNRNRPKPLYSRDVFPEEPSQQNGNMDKNCATDDPLSVSAMASLGLKNPQDIWSLLENSRIFLEALKLFFGKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLQRDANNYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLLLEVNTHRSKLRDFVEKIVKAKLGMNCPLIMHGPALLYEVGDDLDKDMAANYAANLEKVLSELPSPVTGGTMLTVEDLQQEFTCNINIKHREEFDEEKEPDGMLLSGWTQAPRVEKDDNKTVGNGGSSTSNASSAMPVEAEEDDDIEFVPTGKKRKVGEISKATNPNLSDVADDDVLVMLDGENLDINKKKKLQ* 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3142871 3151289 + Vvi3g336 Vvi3g336 784011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g336 618 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 1 487 IPR035985 GO:0008641
Vvi3g336 618 PIRSF SUMO_E1B 1 599 IPR030661 GO:0016925|GO:0019948
Vvi3g336 618 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 540 IPR045886 -
Vvi3g336 618 MobiDBLite consensus disorder prediction 536 576 - -
Vvi3g336 618 Gene3D - 420 573 - -
Vvi3g336 618 Pfam Ubiquitin-activating enzyme, SCCH domain 311 353 IPR019572 -
Vvi3g336 618 Pfam ThiF family 1 417 IPR000594 -
Vvi3g336 618 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 1 540 - -
Vvi3g336 618 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 426 518 IPR028077 -
Vvi3g336 618 CDD Uba2_SUMO 1 419 - -
Vvi3g336 618 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 147 358 IPR023318 -
Vvi3g336 618 Gene3D - 1 92 IPR042449 -
Vvi3g336 618 MobiDBLite consensus disorder prediction 545 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g336 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - vvi:100253801 1218.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44