Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g339 ATGGCGAGCGAAGCAGAAGACGCCGTACGACGTCGTACAACCACCACCGACTACCGTAAGAAGCTGCTCCAGCACAAGGAGCTCGAGTCCAGAGTTCGATCAGTGAGAGAGAATTTGCGGGCTGCCAAAAAGGAATATGCTAAAACTGAAGATGATTTGAAATCGCTTCAGAGTGTTGGGCAAATTATAGGCGAAGTTCTTAGGCCTCTTGACAATGAACGCTTGATAGTGAAAGCAAGCAGTGGACCAAGGTATGTGGTTGGCTGTCGCAGTAAAGTGGACAAGGAAAAACTGACTGCAGGCACCCGTGTAGTTCTTGATATGACTACTCTCACAATTATGCGGGCTCTTCCACGAGAAGTTGATCCAGTTGTATATAACATGCTTCATGAAGACCCAGGTAATGTTAGCTACGCAGCGGTGGGAGGTCTGTCAGATCAGATTCGAGAACTCCGGGAATCCATTGAATTGCCTCTAATGAATCCTGAGCTCTTTATTAGGGTGGGGATTAAGCCTCCCAAGGGTGTTCTTCTCTATGGACCTCCTGGAACAGGCAAGACACTGTTAGCCAGAGCAATTGCGAGCAACATAGATGCTAACTTTTTGAAGGTTGTCTCAAGTGCCATTATTGATAAATATATTGGTGAAAGTGCGAGATTGATAAGGGAGATGTTTGGATATGCACGAGATCACCAACCCTGTATCATTTTTATGGATGAGATTGATGCCATTGGTGGGCGTCGTTTCAGCGAGGGAACAAGTGCTGATCGTGAAATTCAGAGAACACTCATGGAGTTGCTCAACCAGCTGGATGGATTTGATCAGCTTGGGAAGGTCAAAATGATTATGGCAACAAATAGACCTGATGTTCTGGACCCTGCACTTCTTCGTCCTGGGCGACTGGATAGGAAGATAGAAATTCCATTGCCAAATGAACAATCCAGAATGGAAATCCTTAAAATCCATGCTGCTGGAATTGCTAAACATGGTGAAATCGACTATGAAGCTGTTGTAAAGCTGGCTGAGGGGTTTAATGGAGCCGATCTTCGTAATGTTTGCACTGAAGCTGGGATGTCAGCAATTCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACTTGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGACTAA 1200 45.17 MASEAEDAVRRRTTTTDYRKKLLQHKELESRVRSVRENLRAAKKEYAKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYAAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3158671 3165038 + Vvi3g339 Vvi3g339 784014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g339 399 SMART AAA_5 172 311 IPR003593 -
Vvi3g339 399 ProSitePatterns AAA-protein family signature. 279 297 IPR003960 GO:0005524|GO:0016887
Vvi3g339 399 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 386 - -
Vvi3g339 399 Pfam ATPase family associated with various cellular activities (AAA) 176 309 IPR003959 GO:0005524|GO:0016887
Vvi3g339 399 Pfam Proteasomal ATPase OB C-terminal domain 63 118 IPR032501 -
Vvi3g339 399 CDD AAA 142 309 - -
Vvi3g339 399 Gene3D - 24 128 IPR012340 -
Vvi3g339 399 Gene3D - 129 309 IPR027417 -
Vvi3g339 399 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 23 380 IPR005937 GO:0005737|GO:0030163|GO:0036402
Vvi3g339 399 Coils Coil 25 59 - -
Vvi3g339 399 Pfam AAA+ lid domain 332 374 IPR041569 -
Vvi3g339 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 384 IPR027417 -
Vvi3g339 399 Gene3D - 310 380 - -
Vvi3g339 399 PANTHER - 4 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g339 K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4 - vvi:100243563 771.926
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g339 Vvi18g1001 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g339 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002198 2 2 2 2 2 1 3 1 2 2 1 1 4 2 2 4 1 1 4 1 2 2 2 2 0 2 3 0 4 2 59