Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g340 ATGGACGCCTTCGCTTTGCCCGTTGAAGGCACCGAAACTAGGGTTAATGCTCAGGCCGATGCTTATGAGTATATGGTTGATTATTCCCAGACCAACAAGCAGGCAGGACGGCTGGAAAATGTAGTTGGGTGGTACCACTCTCATCCTGGTTATGGATGCTGGCTTTCGGGTATTGATGTTTCAACACAAATGCTCAACCAACAGTTTCAGGAGCCCTTTCTCGCAGTTGTTATTGATCCAACAAGGACTGTTTCTGCTGGAAAAGTTGAGATTGGAGCATTCAGGACATACCCAGAAGGATACAAGCCTCCAGATGACCCTGTCTCTGAATATCAGACCATTCCTTTGAATAAGATTGAAGACTTTGGTGTACATTGTAAACAGTATTATGCATTGGACATAACATATTTCAAGTCTTCTCTTGATTGTCACCTCTTGGATCTTCTGTGGAATAAATATTGGGTCAACACTTTGTCATCTTCTCCTTTGTTGGGGAATGGAGACTATGTTGCAGGACAAATTTCAGATCTAGCGGAAAAGCTGGAGCAGGCAGAGAATCAATTGGCTCATTCGCGCTTTGGACCCCTAATAGCACCTTCCCAAAGAAAGAAAGAGGAGGAATCTCAACTTGCTAAGATAACTCGAGATAGTGCAAAGATTACTGTTGAGCAAGTGCATGGGCTAATGTCGCAGGTTATCAAGGACATTCTTTTCAACTCTGTGCGCCAGTCTAACAGATCTCGCACTGAGCCATCTGGCCCAGAACCCATGATTGAAACTTGA 783 44.32 MDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPSQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNRSRTEPSGPEPMIET* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3165258 3173838 - Vvi3g340 Vvi3g340 784015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g340 260 PANTHER BNAC07G13420D PROTEIN 1 255 IPR037740 GO:0004222|GO:0008180
Vvi3g340 260 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 1 255 - -
Vvi3g340 260 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 1 71 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi3g340 260 Pfam Cop9 signalosome subunit 5 C-terminal domain 159 239 IPR040961 -
Vvi3g340 260 SUPERFAMILY JAB1/MPN domain 37 99 - -
Vvi3g340 260 SMART pad1_6 1 99 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi3g340 260 ProSiteProfiles MPN domain profile. 1 100 IPR037518 -
Vvi3g340 260 Gene3D Cytidine Deaminase, domain 2 1 165 - -
Vvi3g340 260 CDD MPN_RPN11_CSN5 1 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g340 K09613 COPS5, CSN5; COP9 signalosome complex subunit 5 [EC:3.4.-.-] - vvi:100265887 531.946
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006583 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38