Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g341 ATGGCTTCTAATTCGAAGCTCTCAAATCAAATCCAGAACATCAGCTTAGGGCTCAATGACTCTGAACTCGACAGGTTCGCCGATGTCGGCAACAAAGTTGCTGATGCCGCCGGAGAAGTGATTCGCGGGTATTTTCGCAAAAAGTTTGACATTCTCCAGAAGGAGGATTTAAGTCCTGTAACAATTGCAGATCAAGCAGCAGAGGAATCTATGGTTTCAATCTTATTAGAGAGTTTTCCTTCTCATGCAATTTATGGAGAGGAGAATGGGTGGAGATGTAAAGAGAAGTTTGCAGACTATGTTTGGGTTTTAGATCCAATAGATGGGACAAAGAGTTTCATAACTGGCAAACCATTGTTTGGCACTTTAATTGCTCTTCTGCACAAGGGTAGACCGATTCTTGGCATAATTGATCAGCCTGTTTTACGTGAAAGATGGATTGGGATGAGTGGAAGAAAAACTACATTGAATGGACAAGAAGTAGCCACACGGGATTGTGCAAAACTAGCACAAGCGTATTTGTACACCACAAGTCCTCACCTGTTCAGTGGAGATGCTGAAGATGCATTTGCCCGTGTTAGAAATAAGGTGAAAGTGCCATTATATGGCTGTGACTGTTATGCTTATGCCCTTTTGGCATCTGGATATGTGGATCTTGTGATTGAGTCTGGTCTCAAGCCATATGATTTCCTTTCGCTGGTACCCGTGATAGAAGGTGCTGGGGGAGTCATAACTGACTGGAAAGGGCAACAGCTTTATTGGGAGGCTTCCTCAGATTCACATGCCCCAAGTTTTAATGTAGTGGCCGCAGGAGATGAAGAGCTTCACCAGCAAGCTCTAGATTCATTGCAATGGCAGTAA 861 43.79 MASNSKLSNQIQNISLGLNDSELDRFADVGNKVADAAGEVIRGYFRKKFDILQKEDLSPVTIADQAAEESMVSILLESFPSHAIYGEENGWRCKEKFADYVWVLDPIDGTKSFITGKPLFGTLIALLHKGRPILGIIDQPVLRERWIGMSGRKTTLNGQEVATRDCAKLAQAYLYTTSPHLFSGDAEDAFARVRNKVKVPLYGCDCYAYALLASGYVDLVIESGLKPYDFLSLVPVIEGAGGVITDWKGQQLYWEASSDSHAPSFNVVAAGDEELHQQALDSLQWQ* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3176214 3181195 - Vvi3g341 Vvi3g341 784016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g341 286 PANTHER 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 21 284 - -
Vvi3g341 286 Gene3D - 13 161 - -
Vvi3g341 286 Pfam Inositol monophosphatase family 26 264 IPR000760 GO:0046855
Vvi3g341 286 PANTHER PHOSPHATASE 21 284 - -
Vvi3g341 286 ProSitePatterns Inositol monophosphatase family signature 1. 102 115 IPR020583 -
Vvi3g341 286 PRINTS Inositol monophosphatase superfamily signature 58 78 IPR000760 GO:0046855
Vvi3g341 286 PRINTS Inositol monophosphatase superfamily signature 80 96 IPR000760 GO:0046855
Vvi3g341 286 PRINTS Inositol monophosphatase superfamily signature 102 118 IPR000760 GO:0046855
Vvi3g341 286 PRINTS Inositol monophosphatase superfamily signature 151 174 IPR000760 GO:0046855
Vvi3g341 286 PRINTS Inositol monophosphatase superfamily signature 225 249 IPR000760 GO:0046855
Vvi3g341 286 TIGRFAM his_9_HisN: histidinol-phosphatase 28 284 IPR011809 GO:0004401
Vvi3g341 286 CDD Bacterial_IMPase_like_1 26 280 - -
Vvi3g341 286 SUPERFAMILY Carbohydrate phosphatase 23 284 - -
Vvi3g341 286 Gene3D - 162 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g341 K18649 IMPL2; inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase [EC:3.1.3.25 3.1.3.93 3.1.3.15] - vvi:100260677 578.556
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g341 . . . . . . . . . . . Cma20g00827 . Car20g00712 . . . . . . . . . . . . . . . . . Cone12ag1167 Cone8ag1215 . . Lsi10g00398 . Chy11g00353 . Blo04g00524 . . . . . . . Sed01g0282 . Cmo20g00837 . . . . Cpe16g00262 . Bhi10g01970 Tan05g1265 Cmetu11g1211 . Hepe08g0993 . . . . . . . . . . Csa02g01288 . Cme11g00142
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011027 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31