Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g347 ATGGAGATCACCAGCTTGAGCCAAGCCATGCAGCTACACGCACAAATCCTCAAATCACCTGACCCGAAAAAGCAGACCCGGAACCTCACCCCACTCTTCACCTTCGCTGCACTCTCACCGGCCGGCGACCTCACCTACGCCCACCTCATCCTCAACTCCCTCTCCACTCAAAACTCCTTCTTTCACAACACCATGATTCGAGCCTATTCTCAAACCCCCGACCCGACCCAAGCTCTGCACCTCTTCCTCTCAATGCTCTGCCAACCCACGTCACCCCGACCCGACAAGTTCACGTACCCATTCCTCCTCAAGTCATGCGCCCGATTGAAGCAACCCCGGGTAGGAAAGCAGCTCCATGGGTTGATATACAAGTCGGGCCTAGAATCGGATCGGTACGTGTCGAACGGGTTGATCCATATGTATTCGAGTTGCGGGAAGTCGGGTCGTGCGTACAAGGTGTTCGGGAAAATGCGTGACAGAGATGTGGTGTCTTGGACATCGATGATCGATGGGTTTGTTGATGATGATCGGGCTCTTGAGGCTATAAGGTTGTTTGAGGAAATGGTGGAAGATGGAGTTGAGCCCAATGAGGCAACTGTAGTTTCGGTTCTGAGAGCTTGCGCAGACGCTGGAGCAGTTGGTATGGGGAGGAGAGTTCAAGGGGTTATTGAGGAGAGAAAGATTGGTTTGGAGGCCAATGTGAGAACAGCTCTTATTGACATGTATGCAAAATGCGGGTCCATTGGTAGTGCGAGGAAAGTGTTTGATGGGATTGTGAATAAGGATGTTTTTGCTTGGACTGCTATGATATCTGGCCTTGCTAACCATGGGCTGTGTGAGGAGGCTGTTACTTTGTTTGATCAGATGGAGTCTTTTGGCCTAAGGCCGGATGAGAGGACAATGACTGCAGTTTTATCAGCTTGTAGGAATGCAGGCTGGTTTAGTGAAGGTTTTGCTTATTTTAATAGTATGTGGTGCAAATATGGAATAAAACCGACAATTCAGCACTATGGATGCATGGTAGACCTCCTTGCTCGAACTGGGCATCTAGATGAGGCTGAGGAGTTTATTAGAAAGATGCCCATTGAGCCTGATGTGGTTCTGTGGAGAACCTTGATATGGGCTTCTAAAGTTCATGGTGACATTGATAGAAGTGAGCAGTTGATGAAAGATCGTGGGCTCCTAAAGATGGATTCTGATGATTGTGGGAGTTATGTACTTCTTGGAAATGTCTATGCATCTGCTGGGAAATGGCATGATAAGGCAAAGATGAGAGAGTTAATGAATCAAAAAGGGCTTTCAAAGCCACCAGGGTGTAGCAGGATTGAAGTGGATGGCTTAGTCCATGAATTTGCAGCAGGAGATTCAGGTCACATTGAAGCAGAAAAAATCTATGCAAAATTGGATGAAGTGGAAGAGAGATTGAAAGCAGAAGGGTATCATCCAAAACTCTCAGAGGTTCTGCTTGAAATTGACAACAAGGAGAAAGCTTTTCAACTGCGTCACCATAGTGAAAAGCTTGCTGTTGCTTTTGGACTAATCAAAACTAGTCCAGGGACTGAAATCCGCATTGTGAAAAACTTGCGATCTTGTGAGGACTGCCACTCTGTTTTGAAATTAATCTCAAAGATATACCAACAGGATATAATTGTTAGAGATCGGATCCGCTTCCATCATTTCATTAATGGGGACTGCTCATGTAAGGATTACTGGTAG 1716 46.62 MEITSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3219635 3221351 + Vvi3g347 Vvi3g347 784022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g347 571 Gene3D Tetratricopeptide repeat domain 225 448 IPR011990 GO:0005515
Vvi3g347 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vvi3g347 571 Pfam E motif 393 443 IPR046848 -
Vvi3g347 571 Gene3D Tetratricopeptide repeat domain 160 224 IPR011990 GO:0005515
Vvi3g347 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi3g347 571 Pfam DYW family of nucleic acid deaminases 479 571 IPR032867 GO:0008270
Vvi3g347 571 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 559 - -
Vvi3g347 571 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Vvi3g347 571 TIGRFAM PPR: pentatricopeptide repeat domain 163 197 IPR002885 -
Vvi3g347 571 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Vvi3g347 571 Pfam PPR repeat 337 360 IPR002885 -
Vvi3g347 571 Gene3D Tetratricopeptide repeat domain 3 159 IPR011990 GO:0005515
Vvi3g347 571 PANTHER TRANSCRIPT PROCESSING PROTEIN, PUTATIVE-RELATED 1 559 - -
Vvi3g347 571 Pfam PPR repeat family 160 208 IPR002885 -
Vvi3g347 571 Pfam PPR repeat family 261 308 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g347 - - - vvi:100262445 1161.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006872 1 7 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 2 1 1 0 1 31