Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g349 ATGGGTTTTGATTTGGATCCCCTCGACGATGTGCTTCCTGAGCCTGCTGCTATCAATGCTCGGGCTGGGGGCAAGTTTCAACCAAAGGCAAAAGCCCGACCTAGAAAGGGAACATCTGCCTCAGTTCCATCAACTATTTCTAATGCTACAAAGGAAAAGACAATTAGGCCGACCACTACTGGCTCAGACACAACACAGTCTCTTCGCCCTATCGATGTTATACAGAATGGATTAAATGACACAGTTGGTTCATCTCTAGATACCTCAGAGATTGGTGGGAGTAAAGATACTTTGAAAGACCATGAGGGTTTGGTTGGAGGAGTTTCATTCACTGATAACAATAGAAGTCTGGCATCGGTGAGTTCCCTGTCCCAAGTTTTTGCCTCTGGAGAGGATGTGGGCACCACAGGTGCTCCCCCTTCAGAGACAGGTGCTCCACATCCAGGAGCCATATCTGATGGCAATGGTGATTGGCATTCTAGCTTTGGGAAAAAATTGAAAAATTACGAGGGTTCTCCTTCAGAACTTCAATTTCCTCGTGAAAGCAGAAGCTCATTTCTAGTGAACCCCTCATCTCAACTTCTTGTGGAGGATTTGGGCTCCACAGATGCTCTGCATTCGGAGGTTGCTGCTTCTGATGGCAATGGTGATTGGGTCTCTAGTTTTGGAAAATCAGTGGGAGAGGCAGACACTCTGGGGTTTGATTTGGACCCATTTGATGACATTCTTCCTGGGCCTGCCACAAGCAATGTTAGGGGTAGTGGCAAGTTTCAACCCAAGGCCAAGTCTCAACCAAGGAAGGAAACATCTGCATCAGTCACTACCACTCTCCCTGATGTCACAAAGGAAAAACCAGTTACACTAGCCTCCATTGGCATAGATGCAGCACAGTCTGTTCAGCCGGCTAATGTTGTAGGGGTTACATTCTGTGATGATGATAGAAGCTCTGTAATGGTAAACCCCTCAGGTCCACTTGATGCAATAGATGCTCTGCATTCAGAAGTTGCAATTTCTGATGGCAATGGTGATTGGAATTCTAGCTATGGAAAATCAACAGGAGAGAATGCAGACATATTTTCTGGGTTGGAATATCTTGATGATTTTCTCTCTCAGCCTGCCACTGTGACAGTGAGTGCTGCAAGTAAGCCCCAACCTCAGGTTAACATGAATGCCCTCCCAGGGAACAAGTTCCTGGAATCATATCCTGTTTATACTGATGCTGAAGGTCGGCTCTCTCCTTCAGAGGCACAAAATCTTCCTGCTTCCAATAACAAGGACATAGGGGAGGAACCTGAAGATCAAGCGGGTGGGAGGCAAGCTGATGTCTGTAAAAATGATCAAGATTTTCAGATTGATAATAGAAGGTTGCAGCCAGAGGAAGTAGAGGCCTTTTCTGGCTTGGAAACTCTAGATATTTTGTCAAAGGCCACCCTTGCATCTGGGCAACATATGGGAGAAAACCCATCCCAATCCAAGCTACATACTGACAAAGATAAACCTAGCTTTGATGTGCCCCATCCAGACACAGTTGAGTCCGTTTCATGTTCACAGGATGCTCATTTGCTTCCATCTGAAACTGAATACATGGATGAGGACTCGATTCCTGCTTTCCCAGCTGGTGAAGTTCTTGATTTCTCATCTGTGAGGTTCAGTGACTCTGCTTCTACAGATCCTACCTATGAATTACCAGTGAACAATAAAGACCTTGCAAAGAGTGCCAACTTAGATGCTGCTGCTTCTGGAGATGTGCATTCAGCAGGGGCTGGTCCTAAAATTCCTGGAAGTGAGAGTTCAAAGGGCAGAAAAAGAAAAACTTCGACAGGATCTGTTCTCTCTCAAAAGGGCCAAAAATCTTCCACAGCTGTTGACAAGAATGAAACTGGGAAATCATCAAGGCGGCTGAGAAAACGGATACTTACACATGAACTTGTTGATGAGTCTGAGGATGAGGCTCGTGATAATGGGGCCAAGCCTGCTGAACCTCCTATTAATTCTGTTGCTGATGAGGATAGAAATAGGGATGATGAGTGCAAGGTGAAAAATTTATCCCGAAAGAAAAGAGCTCCAAGAAAGTCAATGAAATCTGTTGCTGAAAATGAAAAGCCAGTTCGGAAGCGTAAGAATGCCAATGAAACAGGGGACAAGTCAACCAAAGAACCTCCCAAGAAATTTTCACATTCTACCAGGAGGAAAAGAAGATGTGTGGACAAGACTTTGCTTGAAACACCGGAGGATGAAATTGACCCTCAAAAGTTGCCCATTAGGGATCTAATTGTTCTGTCAGAGATGAGAGAGCGGATGAATAAAGAGGCCTCATCATCGAAAGTACCATTGGCCAATCAAAGTGCTGATGATTCTTATCTGCATGATTCTTTTGATAATGGATGGGAAACTGGTGCTACAGAACAGGCTAGGGCATCAAATGATGATGAAGAAAATGTTAGGATTCAATCAAGTAGTCATTACATTAATTACCAGTCTTACATGGACAAAACACCCACTTCAAGATGGTCAAAAAGTGACACAGAGTTGTTCTACGAGGCTGTTCAGCAGTTTGGGACAGATTTTTCTATGATAATGCAACTTTTCCCTGGTCGAACACGTAATCAAGTCAAGTTGAAGTATAAGATGGAAGAGCGTAAACATCCACTGAGGCTTTTTGAAGCTTCGACAAATCGTGCCAAAGATCATTCCCATTTTGAACTAGTAATTGAGCAGCTGAAACAAGTTGCTGCTCAGGAAGAACAGAACTCAAAGCAGGAGAACTCAGTTGGTTTGACAGGTGTGGAGGAGGAGATGGAAGAGGTGACTCTTGAAACTAATGAAGGTGCAACAAAGTCTGGCCAAAATGAAGAAGGTGCCGTTGAAGAAGCTTTAGCTGAAGACAAGGAAACAGACGTTGCTGAATTTGGTCCTGAGAAGTCTGATGAAAGTGATGATGACCTGTATAGATGGAGTCAATATAAAAGTGAATTATAA 2979 44.11 MGFDLDPLDDVLPEPAAINARAGGKFQPKAKARPRKGTSASVPSTISNATKEKTIRPTTTGSDTTQSLRPIDVIQNGLNDTVGSSLDTSEIGGSKDTLKDHEGLVGGVSFTDNNRSLASVSSLSQVFASGEDVGTTGAPPSETGAPHPGAISDGNGDWHSSFGKKLKNYEGSPSELQFPRESRSSFLVNPSSQLLVEDLGSTDALHSEVAASDGNGDWVSSFGKSVGEADTLGFDLDPFDDILPGPATSNVRGSGKFQPKAKSQPRKETSASVTTTLPDVTKEKPVTLASIGIDAAQSVQPANVVGVTFCDDDRSSVMVNPSGPLDAIDALHSEVAISDGNGDWNSSYGKSTGENADIFSGLEYLDDFLSQPATVTVSAASKPQPQVNMNALPGNKFLESYPVYTDAEGRLSPSEAQNLPASNNKDIGEEPEDQAGGRQADVCKNDQDFQIDNRRLQPEEVEAFSGLETLDILSKATLASGQHMGENPSQSKLHTDKDKPSFDVPHPDTVESVSCSQDAHLLPSETEYMDEDSIPAFPAGEVLDFSSVRFSDSASTDPTYELPVNNKDLAKSANLDAAASGDVHSAGAGPKIPGSESSKGRKRKTSTGSVLSQKGQKSSTAVDKNETGKSSRRLRKRILTHELVDESEDEARDNGAKPAEPPINSVADEDRNRDDECKVKNLSRKKRAPRKSMKSVAENEKPVRKRKNANETGDKSTKEPPKKFSHSTRRKRRCVDKTLLETPEDEIDPQKLPIRDLIVLSEMRERMNKEASSSKVPLANQSADDSYLHDSFDNGWETGATEQARASNDDEENVRIQSSSHYINYQSYMDKTPTSRWSKSDTELFYEAVQQFGTDFSMIMQLFPGRTRNQVKLKYKMEERKHPLRLFEASTNRAKDHSHFELVIEQLKQVAAQEEQNSKQENSVGLTGVEEEMEEVTLETNEGATKSGQNEEGAVEEALAEDKETDVAEFGPEKSDESDDDLYRWSQYKSEL* 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3239809 3255189 + Vvi3g349 Vvi3g349 784024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g349 992 MobiDBLite consensus disorder prediction 130 184 - -
Vvi3g349 992 Pfam Myb DNA-binding like 827 911 IPR039467 -
Vvi3g349 992 SMART sant 833 881 IPR001005 -
Vvi3g349 992 MobiDBLite consensus disorder prediction 38 92 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 626 656 - -
Vvi3g349 992 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 252 979 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 604 625 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 409 440 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 960 992 - -
Vvi3g349 992 SUPERFAMILY Homeodomain-like 835 884 IPR009057 -
Vvi3g349 992 MobiDBLite consensus disorder prediction 692 723 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 573 737 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 426 440 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 913 992 - -
Vvi3g349 992 CDD SANT 836 877 IPR001005 -
Vvi3g349 992 Gene3D - 837 923 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 19 112 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 664 682 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 243 276 - -
Vvi3g349 992 Coils Coil 904 924 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 490 505 - -
Vvi3g349 992 MobiDBLite consensus disorder prediction 481 535 - -
Vvi3g349 992 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 252 979 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g349 K15198 BDP1, TFC5; transcription factor TFIIIB component B'' - vvi:100854024 1955.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1163 Cone8ag1212 . . . . . . Blo04g00521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004585 1 4 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14648 PF15963 Myb_DNA-bind_7 1.30E-27 CL0123 Vvi TF