Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g350 ATGTCTGGACCTCTGGATCGATTCGCGAGACCTTGCTTTGAGGGATTCTCTGGTCATGATGAGAGAAGAGAAAGAAAGTCTGATTTTGAAAACTCGGAAGACGAAAGGAGGACAAGAATTGGGTCTCTGAAAAAGAAAGCTATAAACGCATCTACCAAATTTAAACATTCTCTCAAGAAAAAGAGCAGTAGAAGAAAAAGTGATGGTCGAGTCAGCTCCGTATCAATTGAGGATGTTCGGGATGTTGAAGAACTAGAGGCTGTTGATGCTTTTCGACAAGCATTGATTTTAGATGAACTGTTACCTACAAAACATGATGATTATCATATGATGTTAAGGTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGGATTTTGAGTTCAAAGAGTTGAATGAGGTGTTGAAATACTATCCCCATGGTCATCATGGTGTGGATAAGGAGGGAAGACCTGTTTACATTGAAAGACTAGGAAAAGTTGATCCTTACAAACTTATGCAAGTTACAACTATGGATCGGTATGTTAAATACCATGTGCAGGAGTTCGAGAAAAGCTTTGCCCTAAAGTTTCCAGCCTGTACTATTGCTGCAAAGAGGCACATAGATTCCAGCACAACTATTTTGGATGTTCAAGGCGTGGGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTCATGTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGGTTGCCTCCGGTCTGATAAGGGACCATGGAATAACCCAGATATATTGAAGATGATGCATAATGGTGACGCACGACGTGCTAGACAGGTTGTAAAAGTTTTAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTCCTGTCCGTGAAGAAGCTAAGGTAGTTGGAAAGGTAAGCTATGCTGGTAGCTTCGGGGGGTATGATGAATATGTTCCCATGGTCGACAAAGCTGTTGATGCAGGTTGGAAGAAGCAAGCTGCTCTTCAAAGGCCTTCCTCATCCAAAGGAACACTCCCCCTACTCGATACTCAAAAGTCTCCAGAAGGAATTCATACTAGGATTCTGTCAGCATTACTGGCATTCTTCATGACCCTTTTCACACTCTTCTGTACTGTGGCCTTGCGTGTAACTAATAAGCTTCCTGATAGAGTGGATCATGATGAAAATATCCCTCAACTCGCCCCTGATGCTACACACAAAGAGGATTTCCGCCCCCCTTCACCGATTCCTGCATTTACAGAGGCAGATCTCCTCTCCTCTGTTTTGAAAAAATTGAGTGAGCTTGAGGAAAAGGTTGATACACTTCAAGCAAAACCATCAGAGATGCCTTATGAGAAAGAGGAATTGCTGAATGCTGCTGTATGCCGTGTTGATGCCCTAGAAGCTGAGTTAATTGCTACCAAAAAGGCCCTGCATGAAGCTCTATTGAGGCAGGAGGAATTGCTTGCTTACATAGACAGTCAGGAAGAAGCTAAGTTTCGGAAGAAGAAGTTTTGCTGGTGA 1878 42.71 MSGPLDRFARPCFEGFSGHDERRERKSDFENSEDERRTRIGSLKKKAINASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELEAVDAFRQALILDELLPTKHDDYHMMLRFLKARKFDIEKAKHMWTDMIQWRKDFGADTILEDFEFKELNEVLKYYPHGHHGVDKEGRPVYIERLGKVDPYKLMQVTTMDRYVKYHVQEFEKSFALKFPACTIAAKRHIDSSTTILDVQGVGFKNLTKAARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNKYQNKLLEIIDASELPEFLGGTCTCADQGGCLRSDKGPWNNPDILKMMHNGDARRARQVVKVLNSEGKVIAYAKPQYPMMKGSDTSTAESGSEAEDIASPKMTKSYSQLRLTPVREEAKVVGKVSYAGSFGGYDEYVPMVDKAVDAGWKKQAALQRPSSSKGTLPLLDTQKSPEGIHTRILSALLAFFMTLFTLFCTVALRVTNKLPDRVDHDENIPQLAPDATHKEDFRPPSPIPAFTEADLLSSVLKKLSELEEKVDTLQAKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALLRQEELLAYIDSQEEAKFRKKKFCW* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3260715 3270012 + Vvi3g350 Vvi3g350 784025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g350 625 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 623 - -
Vvi3g350 625 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Vvi3g350 625 MobiDBLite consensus disorder prediction 13 42 - -
Vvi3g350 625 Pfam CRAL/TRIO, N-terminal domain 104 131 IPR011074 -
Vvi3g350 625 MobiDBLite consensus disorder prediction 379 398 - -
Vvi3g350 625 MobiDBLite consensus disorder prediction 1 42 - -
Vvi3g350 625 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Vvi3g350 625 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Vvi3g350 625 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Vvi3g350 625 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Vvi3g350 625 SMART sec14_4 152 323 IPR001251 -
Vvi3g350 625 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Vvi3g350 625 CDD SEC14 150 321 IPR001251 -
Vvi3g350 625 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 623 - -
Vvi3g350 625 Coils Coil 582 602 - -
Vvi3g350 625 Gene3D - 76 139 - -
Vvi3g350 625 Gene3D - 140 352 IPR036865 -
Vvi3g350 625 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Vvi3g350 625 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Vvi3g350 625 Coils Coil 543 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g350 - - - vvi:100252199 1207.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g350 Vvi18g988 ECH
Vvi3g350 Vvi4g1029 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43