Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g351 ATGAACATTGCAGTCGAGGAGGATGACCTTGATGCAGAAGAACTACAGGCAGTAGATGCATTTCGCCAAGCACTTATCTTGGAGGAGTTGCTACCCTCAAAACACGATGACTCCCGAGTGATGCTAAGATTCTTGAAGGCCAGGAAATTTGATATTGAAAAAACAAAGCAAATGTGGGCTGATATGATCAATTGGAGGAAGGAGTTTGGCGCTGACACAATCATGGAGGATTTTGAATTCAAGGAAATTGATGATGTCCTTGAATACTACCCACAAGGACATCATGGAGTTGATAAAGATGGGCGGCCTGTTTATATTGAGAGACTTGGTAAAGTCGATCCTGTCAAGCTAATGCAAGTCACAACACTGGAGCGCTATGTGAAATACCATGTACGGGAATTTGAGAGGACCTTCAAAGTCAAGTTCCCAGCTTGCTCAATAGCAGCGAAAAGACACATTGATCAAAGCACCACTATTCTGGATGTGCAAGGAGTGGGACTTAAAAATTTCAACAAATCTGCAAGGGAACTTATTATGCAACTTCAGAAGATAGATGGCGAAAATTATCCTGAGACACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATGTGTTGGGTAATAAATACCAGAGCAAGTTGCTTGAAGTAATCGATGCTAGTGAGCTGCCAGAGTTTTTGGGTGGTACTTGTACTTGTGCTGATAAAGGTGGTTGTATGCGTTCGGATAAGGGCCCCTGGAATGATCCAGAAATACTGAAGATGGCTCAAAATTATGACGCCAAAAGCTTTAAGAAAATTTTAATTCCTGTCATCGACGAGAATACGGTTTCTGGGGAAGAGATGGCACATAAGAAATGTGATTCTTTCGACTCAGACATCAGTTTTGACTCAGGAGATAAGTGGTCTCACTCTTCCAGACTTGCAAAGGAGCATGTAGAACATCAACCACTCTCTCCTGTTCAAGAAGAAGTAAGTTTTCTCAAATATCCCAACACAAAGGACTATGGTGGTTATGAGTATGAGGGCTTCATTCAAGTGGTTGACAAGGCTGTGGATGCAACCTGGCCTAAAGCTGTAAACAACAACCCCCAATTTGCCCTTTCTAGAGATTGTTTCCCCACACATGGAGATCCTTGCAGGCCTCAAGGACGAGTAACTGATCAAATTTTCAGTGGGTTGATGAGCTTTGTGGTGGGCATCATCACAATGATCCGCTTGACAAAAAACATGCCAAAGAGGCTCACAGATGCCACCCTTTATTCTACTCCAGACTACTGCGTGGACACAATAGTAAAAAGCCATGCACAACATCCCCAGAAGTCACCAGCACCAGAAGTTTCCAGTGTGGATTACATGTCCATCATCAAGCGTGTAGCTGAAGTGGAAGAAAAGATGAGCGTCCTAAGCATTAAATCCATGGCCATGCTAGCTGAGAAAGAGGAAATGATGAATGCTGCTATAAACCGCGCCAATGCCCTGGAGCAAGAACTGGCAGCAAACAGGAAGGCTCTGGAGGAGGCTCTTATACGACAGGGAGAATTGATGACCTACATCGAGAAGAAGAAGAAGAAGAAAAAGAAGTTTATAAAGAAGTTGAACCCATTCTGCTGGTGA 1680 43.27 MNIAVEEDDLDAEELQAVDAFRQALILEELLPSKHDDSRVMLRFLKARKFDIEKTKQMWADMINWRKEFGADTIMEDFEFKEIDDVLEYYPQGHHGVDKDGRPVYIERLGKVDPVKLMQVTTLERYVKYHVREFERTFKVKFPACSIAAKRHIDQSTTILDVQGVGLKNFNKSARELIMQLQKIDGENYPETLCRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADKGGCMRSDKGPWNDPEILKMAQNYDAKSFKKILIPVIDENTVSGEEMAHKKCDSFDSDISFDSGDKWSHSSRLAKEHVEHQPLSPVQEEVSFLKYPNTKDYGGYEYEGFIQVVDKAVDATWPKAVNNNPQFALSRDCFPTHGDPCRPQGRVTDQIFSGLMSFVVGIITMIRLTKNMPKRLTDATLYSTPDYCVDTIVKSHAQHPQKSPAPEVSSVDYMSIIKRVAEVEEKMSVLSIKSMAMLAEKEEMMNAAINRANALEQELAANRKALEEALIRQGELMTYIEKKKKKKKKFIKKLNPFCW* 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3270356 3273742 - Vvi3g351 Vvi3g351 784026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g351 559 Coils Coil 498 532 - -
Vvi3g351 559 Gene3D - 3 69 - -
Vvi3g351 559 CDD SEC14 83 251 IPR001251 -
Vvi3g351 559 Pfam CRAL/TRIO, N-terminal domain 34 61 IPR011074 -
Vvi3g351 559 SMART CRAL_TRIO_N_2 37 62 IPR011074 -
Vvi3g351 559 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH12-LIKE 6 550 - -
Vvi3g351 559 SUPERFAMILY CRAL/TRIO domain 82 279 IPR036865 -
Vvi3g351 559 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 6 550 - -
Vvi3g351 559 SUPERFAMILY CRAL/TRIO N-terminal domain 6 78 IPR036273 -
Vvi3g351 559 Gene3D - 70 282 IPR036865 -
Vvi3g351 559 Pfam CRAL/TRIO domain 88 250 IPR001251 -
Vvi3g351 559 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 256 IPR001251 -
Vvi3g351 559 SMART sec14_4 82 253 IPR001251 -
Vvi3g351 559 PRINTS Cellular retinaldehyde-binding protein signature 40 62 - -
Vvi3g351 559 PRINTS Cellular retinaldehyde-binding protein signature 209 228 - -
Vvi3g351 559 PRINTS Cellular retinaldehyde-binding protein signature 242 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g351 - - - vvi:100245225 1055.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g351 Vvi4g1029 ECH
Vvi3g351 Vvi18g988 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40