Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g352 ATGGACCAAGTAGAGAAAAGGCCATTTTACCTGTATAGTAAACCACAAATTACGCGAAATTTTGAAGCTTACAAGGAGGCTTTGGAGGGTTTAAGATCGATTATTGGGTATGCGATTAAAGCCAACAATAATTTGAAGATTTTGGAGCATTTGAGGGAGTTGGGGTGCGGTGCCGTTTTGGTGAGCGGGAACGAGTTGAGGTTGGCTCTTCGAGCTGGGTTTGATCCAACAAGGTGTATCTTTAATGGGAATGGGAAGCTTTTGGAGGATTTGGTGCTAGCTGCCCAAGAAGGTGTCTTTGTCAATGTTGATAGTGAATTTGATTTGGATAATATTATATCAGCTGCAAGAATTGCTGGCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAAATGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATGAGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGGTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGACGAAATCCGAGCTCAAGGCTTTGAAATAAGTTACCTAAATATTGGAGGTGGTCTTGGGATAGATTACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACAGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGAGATCACTTATTGCTAACACTTGCTGCCTAGTTAATCGGGTCACTGGAGTGAAAACTAATGGAACAAAAAATTTTGTTGTGATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAACACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTGATGTGGTGGGCCCTGTTTGCGAATCTGCAGATTTCTTGGGGAAGGATAGAGAACTTCCCACTCCACCTAGGGGAGCTGGCTTGGTTGTTCATGATGCGGGTGCTTACTGCATGAGCATGGCATCAACTTACAATCTCAAGATGCGCCCACCTGAGTACTGGGTTGAAGATGATGGATCCATGTCCAAGATCAGGCATGGAGAGACATTTGAAGACCATGTAAGGTACTTTGAGGGGCTTTGA 1200 43.83 MDQVEKRPFYLYSKPQITRNFEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPPPSDAQISTFDVVGPVCESADFLGKDRELPTPPRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSMSKIRHGETFEDHVRYFEGL* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3277621 3287627 + Vvi3g352 Vvi3g352 784027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g352 399 PRINTS Diaminopimelate decarboxylase signature 143 152 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 PRINTS Diaminopimelate decarboxylase signature 363 385 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 PRINTS Diaminopimelate decarboxylase signature 55 72 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 PRINTS Diaminopimelate decarboxylase signature 280 298 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 PANTHER DIAMINOPIMELATE DECARBOXYLASE 5 396 - -
Vvi3g352 399 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 37 55 IPR022653 -
Vvi3g352 399 SUPERFAMILY Alanine racemase C-terminal domain-like 237 394 IPR009006 GO:0003824
Vvi3g352 399 TIGRFAM lysA: diaminopimelate decarboxylase 7 393 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 CDD PLPDE_III_DapDC 8 374 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 263 353 IPR022643 GO:0003824
Vvi3g352 399 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 206 221 IPR022657 -
Vvi3g352 399 Gene3D Alanine racemase 14 259 IPR029066 -
Vvi3g352 399 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 16 262 IPR022644 GO:0003824
Vvi3g352 399 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 8 393 IPR009006 GO:0003824
Vvi3g352 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 69 IPR000183 GO:0003824
Vvi3g352 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 252 271 IPR000183 GO:0003824
Vvi3g352 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 170 183 IPR000183 GO:0003824
Vvi3g352 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 37 55 IPR000183 GO:0003824
Vvi3g352 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 353 366 IPR000183 GO:0003824
Vvi3g352 399 SUPERFAMILY PLP-binding barrel 7 263 IPR029066 -
Vvi3g352 399 Hamap Diaminopimelate decarboxylase [lysA]. 1 397 IPR002986 GO:0008836|GO:0009089
Vvi3g352 399 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 5 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g352 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] - vvi:100247076 805.438
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g352 . . . . . . . . . . . Cma20g00836 . Car20g00722 . . . . . . . . . . . . . . . . . . . . . Lsi10g00389 . Chy11g00364 . . . . . . . . . Sed01g0290 . Cmo20g00844 . . . . Cpe16g00254 . Bhi10g01983 Tan05g1282 Cmetu11g0387 . . . . . . . . . . . . Csa02g01279 . Cme11g00133
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011287 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 1 1 2 1 0 1 1 0 0 1 1 1 2 1 2 29