Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g353 ATGGAGAAAGAGGGTAAAATGGGAAAAATAAAGATTGGATTGGGAGGGAAGGGAAGCCACAATAAAAAGACAAAGATCTTAACCAAAGTGCTTTTTTCTCTCCACTTCTCTTTCTTCTTTCACCAACTTACTCTCCTATCTTTTCTCTTCCAAACCCTAGTGTCTTCACTCCAATTCTCTTACTTCCTCAGATCCACCATCGCTGCTACATTTTGGTTCAGATTTCCTCCGGTTCTACTGCACTTTTGCAAAAGTTGGTTGTGCAGTCTCAGTTTTCAGTCAACATCTTTAAGTCTTCATTGGGTTCAGGATTCAATTATGGCCAGTGACACTGTTGTGAGCCTTCCTAATGGCAATGCCAATATACAGCCTGATCCACAGAGGACGTACCAAGTTGTTGTGGCTGCAACTCGAGATATGGGTATTGGTAAGGATGGGAAACTACCCTGGAGATTGCCTTCTGACATGAAAATTTTCAAGGACATTACTATGACTGTAGCAGATACTGTGAAAAAGAATGCAGTTATAATGGGTAGAAAAACATGGGAAAGTATTCCTCTTGAGCATCGGCCTCTGCCTGGCCGCCTAAATGTTGTTCTGACTCGTTCTGGAAGTTTTGATATTGCAACTGCAGAGAATGTTGTAATATGTGGAAGCATGGCTTCTGCTTTGGAACTATTAGCTGCATCTCCCTATTGTCTGTCCATTGAAAAAGTGTTTGTTATAGGAGGTGGCCAGATACTAAGGGAAGCTCTCAATGCACCTGGATGTGATGCTATCCACATTACAGAAATTGAGACAAGCTTCGAATGTGACACTTTCATCCCTGCTATTGATTCCTTGGTATTTCAGCCTTGGTACTCATCCTTCCCATTGGTGGAAAACAATATTCGTTATTCTTTCATGACTTATGTTCGTGTGAGAATAAAGAAGTTCTCTTTCTTGCCCAAGATGATCTTTGAGAGGCATGAGGAATACATCTATCTGAGATTGGTTGAAGACATCATCTCAAATGGTGTTCAAAGGGATGATAGGACAGGGACTGGTACTTTATCAAAGTTTGGTTGCCAGATGCGGTTTAATCTACGAAAAACTTTTCCGCTTCTTACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTGCTGTGGTTCATCAGTGGCTCAACAAATGCTAAGGTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGTATTGGCTTGGCAGACAGGGAAGAGGGTGACTTGGGACCCATATATGGGTTCCAGTGGAGGCACTTTGGTGCTAGCTATATTGACATGCATGCTGACTATACTGGCCAAGGATTTGATCAGTTGTTAGATGTTATTAACAAGATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACATGCATGATCGCTCATGTTTGTGACCTTGTTCCTGGTGATTTCATCCATGTTATTGGGGACTCTCATGTTTATCTGACTCATATCAGGCCTCTGCAGGAGCAGCTTCAGAAGCTTCCTAAACCTTTTCCAATTTTGAAGATCAATCCACAGAAGAAGAACATTGATTCTTTTGTGGCAGCTGATTTCCAACTCATAGGTTATGATCCTCATCAGAAAATAGAGATGAAAATGGCGGTATAG 1827 41.98 MEKEGKMGKIKIGLGGKGSHNKKTKILTKVLFSLHFSFFFHQLTLLSFLFQTLVSSLQFSYFLRSTIAATFWFRFPPVLLHFCKSWLCSLSFQSTSLSLHWVQDSIMASDTVVSLPNGNANIQPDPQRTYQVVVAATRDMGIGKDGKLPWRLPSDMKIFKDITMTVADTVKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALELLAASPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETSFECDTFIPAIDSLVFQPWYSSFPLVENNIRYSFMTYVRVRIKKFSFLPKMIFERHEEYIYLRLVEDIISNGVQRDDRTGTGTLSKFGCQMRFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLADREEGDLGPIYGFQWRHFGASYIDMHADYTGQGFDQLLDVINKIKNNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVSHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDSHVYLTHIRPLQEQLQKLPKPFPILKINPQKKNIDSFVAADFQLIGYDPHQKIEMKMAV* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3293149 3300416 + Vvi3g353 Vvi3g353 784028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g353 608 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 317 608 IPR036926 -
Vvi3g353 608 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 302 608 IPR036926 -
Vvi3g353 608 SUPERFAMILY Dihydrofolate reductase-like 127 306 IPR024072 -
Vvi3g353 608 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 141 163 IPR017925 GO:0004146
Vvi3g353 608 Pfam Dihydrofolate reductase 131 306 IPR001796 GO:0004146|GO:0046654
Vvi3g353 608 PANTHER THYMIDYLATE SYNTHASE 1 91 608 IPR045097 GO:0016741
Vvi3g353 608 Hamap Thymidylate synthase [thyA]. 325 608 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 Gene3D Dihydrofolate Reductase, subunit A 110 308 IPR024072 -
Vvi3g353 608 CDD DHFR 133 305 IPR001796 GO:0004146|GO:0046654
Vvi3g353 608 Pfam Thymidylate synthase 327 608 IPR023451 -
Vvi3g353 608 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 91 608 - -
Vvi3g353 608 TIGRFAM thym_sym: thymidylate synthase 328 608 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 ProSitePatterns Thymidylate synthase active site. 470 498 IPR020940 GO:0004799|GO:0006231
Vvi3g353 608 PRINTS Thymidylate synthase family signature 366 387 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 PRINTS Thymidylate synthase family signature 459 478 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 PRINTS Thymidylate synthase family signature 485 500 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 PRINTS Thymidylate synthase family signature 503 529 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 PRINTS Thymidylate synthase family signature 541 558 IPR000398 GO:0004799|GO:0006231
Vvi3g353 608 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 129 306 IPR001796 GO:0004146|GO:0046654
Vvi3g353 608 CDD TS_Pyrimidine_HMase 327 561 IPR023451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g353 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - vvi:100267529 1004.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g353 Vvi18g987 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43