Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g367 ATGTCCGAAAAGAGCAAGATTCTCATCATCGGCGGCACCGGCAAAATCGGAAAATTCATTGTTCCTGCCAGCGCTAGGTCTGGTCATCCTACTTTCTCTCTCGTCAGAGAATGCGGCCTTTCGAATCCTGCGAAGTCGGAACTCTTTGAGAGTTACAAGAGCTCCGGCGTGACTCTGCTGTATGGAGATCTGTACGATCACGAGAGTTCGGTGAAGGCGATCAAGCAAGTGGATCTGGTGATCTCTTCGGTTGGCCACATGCTGTTGCCGTATCAAGATAGGATCATTGCTGCCATCAAAGAAGCTGGAAATGTCAAAATATAG 324 48.77 MSEKSKILIIGGTGKIGKFIVPASARSGHPTFSLVRECGLSNPAKSELFESYKSSGVTLLYGDLYDHESSVKAIKQVDLVISSVGHMLLPYQDRIIAAIKEAGNVKI* 108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3412164 3417863 - Vvi3g367 Vvi3g367 784042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g367 107 Pfam NmrA-like family 7 106 IPR008030 -
Vvi3g367 107 Gene3D - 6 106 - -
Vvi3g367 107 PANTHER PINORESINOL REDUCTASE-RELATED 1 106 - -
Vvi3g367 107 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 106 IPR036291 -
Vvi3g367 107 PANTHER ISOFLAVONE REDUCTASE HOMOLOG A622-LIKE 1 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g367 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - vvi:109122363 201.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015917 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 0 0 0 1 9