Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g370 ATGTCGGAAATCATTGAGAGTTTCAAGAGTTCCGGCGTGACTTTGGTATATGGAGATCTACACGATCACGAGAGTTTGGTGAAGGCGATTAAGCAAGTGGATGTGGTCATCTCGACCGTTGGTCGCGCACAGTTCTCGGATCAAGTCAAGATCATTGCCGCCATCAAAGAAGCTGGAAATGTCAAGAGATTCTTCCCATCAGAGTTTGGAAATGATGTGGACCGTATCCATGCGGTTGGCCCTGCAAAAACAGCATTTGGGATAAAGGCTCAAATCCGCCGCGCTATTGAGGCTGAAGGGATTCCCTACACCTACCCTGGAGCCACTGGTCCCCCCAGGGATAAAATTATTATTCCAGGAGATGGTAATCCAAAAGCTGTTTTTAACAAGGAGGATGACATTGGCACCTATACTATTAAAGCTGTGGATGATCCTAGAACCTTGAACAAAAACCTTTACGTCAGGCCTCCTCAGAACACCTACTCATACAACGAAATTGTCTCCTTGTGGGAGAAGAAGATTGGAAAAACCCTTGAGAAGATATACGTTCCAGAGGAGCAAGTTCTGAAGAACATCCAAGAAGCCTCTGCTCCACTCAATGCAATATTATCAATCGATCACTCTGTTTTCATTAAGGGAGACCAAACCAACTTTGAGATCGAGCCATCATTTGGGGTGGAGGCTTCAGAGCTATATCCCGATGTCAAATACACAACTGTGGATGAGTTGCTCAACCAGCTTGTTTGA 747 45.38 MSEIIESFKSSGVTLVYGDLHDHESLVKAIKQVDVVISTVGRAQFSDQVKIIAAIKEAGNVKRFFPSEFGNDVDRIHAVGPAKTAFGIKAQIRRAIEAEGIPYTYPGATGPPRDKIIIPGDGNPKAVFNKEDDIGTYTIKAVDDPRTLNKNLYVRPPQNTYSYNEIVSLWEKKIGKTLEKIYVPEEQVLKNIQEASAPLNAILSIDHSVFIKGDQTNFEIEPSFGVEASELYPDVKYTTVDELLNQLV* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3436868 3442629 - Vvi3g370 Vvi3g370 784045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g370 248 PANTHER PINORESINOL REDUCTASE-RELATED 2 248 - -
Vvi3g370 248 CDD PCBER_SDR_a 8 243 IPR045312 GO:0016491
Vvi3g370 248 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 2 248 - -
Vvi3g370 248 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 201 IPR036291 -
Vvi3g370 248 Gene3D - 3 234 - -
Vvi3g370 248 Gene3D - 106 243 - -
Vvi3g370 248 Pfam NmrA-like family 2 105 IPR008030 -
Vvi3g370 248 Pfam NmrA-like family 107 238 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g370 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - vvi:100245184 437.958
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g370 . . . Bda08g00939 . . Bma05g00446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe16g00246 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234