Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g373 ATGAATGATCTTATGACAAAATCGTTCCTCAGTTATGTTGAATTGAAGAAACAGGCCATGAAAGATCTCGAATCTGAGCCAGACATCGAGATGGGAAAACTCGACCCAACAGATGAACAAAACCTTACTAACTTCTTCGAAGAAGTGGGTGCAATCAAGACAGATATGGAAGAGATCGTCAATCTCCTTCTAGACCTACAAGATCTAAATGAAGAGTCAAAATCTACGCACAGTGCTAAAGTTCTTCGAGGGCTCAGAGACCGAATAAACTCAGACATGGTAACTATTCTTCGAAAGGCGAAAAATATCAAAGCAAGATTGGGATCCCTTGATCAATCCAATATCGATAATCGCATACTCTTGGTTCTCTTCTTTTTCTTTGATTTATCAATGAGTGTTTTTGGATTTCTCAATCTGTTTCCATCTGTTTCCTTTTCTTCTCTTATAGAGTTTGTGATAGTGTTTGCTCTGTTGGCACAATTTTCCTACCTATAA 495 37.98 MNDLMTKSFLSYVELKKQAMKDLESEPDIEMGKLDPTDEQNLTNFFEEVGAIKTDMEEIVNLLLDLQDLNEESKSTHSAKVLRGLRDRINSDMVTILRKAKNIKARLGSLDQSNIDNRILLVLFFFFDLSMSVFGFLNLFPSVSFSSLIEFVIVFALLAQFSYL* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3461862 3463814 + Vvi3g373 Vvi3g373 784048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g373 164 Coils Coil 52 72 - -
Vvi3g373 164 PANTHER SYNTAXIN-112 4 121 - -
Vvi3g373 164 PANTHER SYNTAXIN 4 121 IPR045242 -
Vvi3g373 164 Pfam Syntaxin 44 118 IPR006011 GO:0016020
Vvi3g373 164 Gene3D - 37 121 - -
Vvi3g373 164 SUPERFAMILY t-snare proteins 41 122 IPR010989 GO:0016020|GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g373 K08486 STX1B_2_3; syntaxin 1B/2/3 - vvi:100262324 219.164
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g373 Vvi4g990 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g373 . Blo15g00703 . . Bpe07g00425 . . Bma12g00507 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002433 5 3 5 4 2 1 2 1 2 2 1 1 2 1 2 1 1 3 2 1 2 3 2 2 1 1 1 2 1 4 61