Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g374 ATGATTCTGGGCATATCAGTCGGAGAAATTTCCCCACAACACCATGATGTTGATGCAAAGAAACATGCAAAGAATGTTGTTTCTCCTAACTTAACAACGTGCCATGAATCTGTTCCTCGGCCTGGTCTCTCCGTGTACTGCTGCCCTCCAAAACCCGAATCAGAAGAGCCCTTCATCGATTTCCAGTTCCCCGATCCCTCCTCGCCTTTACGTCTGCGCCGGGCGGCCCATCTCGTTGATGATGACTACATAGCTAAGTACAGAAACGCCGTATCAATAATGAAATCCCTTCCTTATGATGATCCAAGGAGCTTCCTTAGCCAAGCGAACCTCCATTGTATTTACTGCACCGGCGCCTATAAGCAGAAAAACTCAGATATTCCTCTTCATGTCCACAGATCATGGCTGTTCTTTCCCTGGCACAGAATGATGCTCTACTTCCATGAGCGAATCCTCGGGAGTCTGATCGGAGATGACAGTTTTGCTTTGCCGTTTTGGAACTGGGACAACCCTGATGGCATGGTGATCCCTGAAATGTACGTGACTGGTTCATTAGTTGATACTGATCGGGAAAATTCTCATCTTCCACCCCAAGTTGTGGACTTGAACTACAATTTACAGGAGAAAGGATTGGGACCTGAGGAGCAGATAAAGATCAACATGGCGCTGATGTATACCCAAATGGTATCAGGTGCGAAGACGACTGAACTCTTCATGGGTTGTCCTTATAAGGGAGGTGAGGGAGGCTTCTGTGAAGGACCCGGCACCATAGAGCTTGCACCTCATAATACATTACACGATTGGACCGGTACCGGTTTGAATCCTGGAAGGGAGGACATGGGCTCATTCTACTCTGCTGGAAGGGACCCCATCTTCTATGGACACCATGGGAATGTAGACCGTCTTTGGGAAGTTTGGAGGAGGCTCCAATGGGAGTACTACAATTCAGAGATCACTGACACTGAATGGCTAGATTCTTACTTTTTCTTCCATGATGAGAAAAGGCAGCTTGTGAGGATCAAATTCCAGGATGTTGTCAACATAACAAGGCTCAGGTATGCTTATGAGGAGGTCGAGCTGCCATGGCTCAACGCCCGTCCTCGGCCTTCAGTCCCTCCCAAGATTGCCCGTGACATACTAAAAATGAGAGACCTTGATCATGAGAACAACCAGGAACTTCCAAGCAGCCCCTTTTTATCAGCAGACTTTGGACCCCATGGTCGAACTCTGGACACCACCATAAGGGTAAAGGTCCATAGGCCAAAGAAGCATAGGAGCAAGAAACAGAAAGATTTCAAAGAAGAAGAGGTCATGGTTGTGTATGGAATTGAGGTCAAGGAGGACAGTTATGTTAAGTTTGATGTGTATGTGAATGCAGTTGATGAGACATTAATGGTTGGTCCAGAGTTCAGAGAGTTTGCAGGGACCTTTGTTAACATTCCTATTGGTGGACCTTTGTTAGCCTTCCTCATGTATATGTTATTTGTTAGATACTGCTATTATACAAGCAGGCATCCACTGTCAAAGAATGCCATCTCAGATGTAAAATAG 1551 46.29 MILGISVGEISPQHHDVDAKKHAKNVVSPNLTTCHESVPRPGLSVYCCPPKPESEEPFIDFQFPDPSSPLRLRRAAHLVDDDYIAKYRNAVSIMKSLPYDDPRSFLSQANLHCIYCTGAYKQKNSDIPLHVHRSWLFFPWHRMMLYFHERILGSLIGDDSFALPFWNWDNPDGMVIPEMYVTGSLVDTDRENSHLPPQVVDLNYNLQEKGLGPEEQIKINMALMYTQMVSGAKTTELFMGCPYKGGEGGFCEGPGTIELAPHNTLHDWTGTGLNPGREDMGSFYSAGRDPIFYGHHGNVDRLWEVWRRLQWEYYNSEITDTEWLDSYFFFHDEKRQLVRIKFQDVVNITRLRYAYEEVELPWLNARPRPSVPPKIARDILKMRDLDHENNQELPSSPFLSADFGPHGRTLDTTIRVKVHRPKKHRSKKQKDFKEEEVMVVYGIEVKEDSYVKFDVYVNAVDETLMVGPEFREFAGTFVNIPIGGPLLAFLMYMLFVRYCYYTSRHPLSKNAISDVK* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3468311 3475880 + Vvi3g374 Vvi3g374 784049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g374 516 Gene3D - 25 367 IPR008922 -
Vvi3g374 516 PANTHER AUREUSIDIN SYNTHASE-LIKE 14 484 - -
Vvi3g374 516 Pfam Protein of unknown function (DUF_B2219) 408 481 IPR022740 GO:0004097
Vvi3g374 516 ProSitePatterns Tyrosinase CuA-binding region signature. 132 149 IPR002227 GO:0016491
Vvi3g374 516 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 289 300 IPR002227 GO:0016491
Vvi3g374 516 Pfam Polyphenol oxidase middle domain 318 367 IPR022739 GO:0004097
Vvi3g374 516 Pfam Common central domain of tyrosinase 102 308 IPR002227 GO:0016491
Vvi3g374 516 PANTHER TYROSINASE FAMILY MEMBER 14 484 - -
Vvi3g374 516 SUPERFAMILY Di-copper centre-containing domain 33 363 IPR008922 -
Vvi3g374 516 PRINTS Tyrosinase copper-binding domain signature 132 149 IPR002227 GO:0016491
Vvi3g374 516 PRINTS Tyrosinase copper-binding domain signature 163 168 IPR002227 GO:0016491
Vvi3g374 516 PRINTS Tyrosinase copper-binding domain signature 261 272 IPR002227 GO:0016491
Vvi3g374 516 PRINTS Tyrosinase copper-binding domain signature 288 306 IPR002227 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g374 K00422 E1.10.3.1; polyphenol oxidase [EC:1.10.3.1] - vvi:100257152 1018.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g374 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000241 4 2 3 0 3 11 2 14 10 2 9 9 3 5 7 3 9 3 2 11 3 3 6 5 8 10 4 3 4 1 159