Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g375 ATGTATAAAATTTTTATTAATTTTTATTACAACAGAAAATTTCGACTTCTGCACATGGGTTTTGCTGTTGCGGCAATGAAGATGGTTCATCGTGGTTATATTGTTGTCCTTTTGGTTGAACTGCTTGTTTTCTGTTCTTTCATGGCTTCCTCCGCCACAAGCTCGAATGACATGTCTACTGCCATTCTCATAAGGGTTGACCAGTCTGGAAATGGAGATTATGGCAAGATTCAAGACGCCATTGATGCTGTTCCATCTAATAACTCACAGCTTTATTTCATCTTGGTCAAGCCAGGAACATACAGAGAAAAGATTGTTGTGCCTGCTGACAAGCCCTTCATAACATTGAGTGGCACACAGGCCTCTACTACCATAATAACATGGGGTGATGGAGGGGAGATATTTGAGTCTCCAACACTCTCCATATTGGCTTCTGATTTTGTTGGAAGATATCTCACAATTCAGAATACATTTGGGACAAGCAGCAAAGCTGTTGCAGTAAGGGTATCGGGCGACAGAGCTGCATTCTACAACTGCAGGATCCTGTCTTATCAGGACACTCTCCTGGATGATGCTGGAAGACATTACTACAGAAACTGCTACATTGAAGGAGCCACTGATTTCATCTGTGGAAGTGCTGCTTCTCTCTTTGAAAAGTGTCACCTGCATTCACTCTCTGAAGGAAATGGAGCCATCACTGCCCAACAAAGAGGGTCTACTTCAGAGAACAATGGCTTTACCTTCTTGGGCTGCAAGATCACAGGCGTTGGAACTCCTTACCTTGGAAGGCCATGGGGTCCTTACTCTAGGGTGGTGTTTGTTCTATCCTTCATGTCCAGTGTGGTACAGCCACAGGGATGGGATGACTGGGGAGACTCCAACAAGCAAAGCACAGTATACTATGGCGAATACAAGTGTTATGGTCCTGGTGCCAATAGAACGGAAAGAGTTGAATGGTCGCGGAGCCTATCAAGCGATGAAGCCGTACCCTTCCTGACGAAGGAGATGATAGGAGGGCAGGGCTGGCTTAGACCTGCACCAACCTACTTCATGAGAGGCTCTAGTGTTATCACCATGAATACTGATGGAAAAAACTAG 1098 44.99 MYKIFINFYYNRKFRLLHMGFAVAAMKMVHRGYIVVLLVELLVFCSFMASSATSSNDMSTAILIRVDQSGNGDYGKIQDAIDAVPSNNSQLYFILVKPGTYREKIVVPADKPFITLSGTQASTTIITWGDGGEIFESPTLSILASDFVGRYLTIQNTFGTSSKAVAVRVSGDRAAFYNCRILSYQDTLLDDAGRHYYRNCYIEGATDFICGSAASLFEKCHLHSLSEGNGAITAQQRGSTSENNGFTFLGCKITGVGTPYLGRPWGPYSRVVFVLSFMSSVVQPQGWDDWGDSNKQSTVYYGEYKCYGPGANRTERVEWSRSLSSDEAVPFLTKEMIGGQGWLRPAPTYFMRGSSVITMNTDGKN* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3477197 3481070 - Vvi3g375 Vvi3g375 784050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g375 365 Pfam Pectinesterase 66 339 IPR000070 GO:0030599|GO:0042545
Vvi3g375 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 43 345 - -
Vvi3g375 365 SUPERFAMILY Pectin lyase-like 60 351 IPR011050 -
Vvi3g375 365 Gene3D - 59 353 IPR012334 -
Vvi3g375 365 PANTHER PECTINESTERASE 11-RELATED 43 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g375 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - vvi:100246890 687.567
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g375 Vvi18g961 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51