Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g377 ATGCCCGGAACCGGATTTAATGTGGAGAACGCAGGATTTGAGTCTGCAGGAATACTGAATTGCTCGGGGTTTGAGATGAATCATACTACTTCGAGAACCTCCAGTTGCCCACTAGCGGCGGCGGAGGCTAAAGTTCGGGAGTCTGTTTTGCCAGAGAAGATAGCTTCGGCGGTCGGAAGAGAGAGCTTCAAGAAGAGAAAGGCTGATAAGGTGCAGAGCCCAAAGGTTGTTGCAGAAGAGGAAACCAAAGATAAGAGGATTAAGGGATGTGCAGAGGATGGGGAGTCCAAGATCACTGAGGCAAACAATAACAAAAACAGCACCACCACCACTACAACCACCGCAACCACCACCACCACCAACAACAACAATAGAGAAACATCAGCAGATACTTCAAAGGTTTCAGAAGTTCAAAAACCCGACTACATTCATGTTCGAGCACGGCGAGGCCAGGCCACTGACAGCCACAGCCTGGCCGAAAGAGTGAGAAGGGAGAAAATCAGCGAGAGAATGAAATATCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAAATGACTAACCCTTCATATCTTCACTATGATCCAATACAACAAGTGGCTACATGTGGGGTGGAAATGGGAATAAATCCCGCAGAAATCGCGCTCCGCAGAACCATAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGCCCAGAATTTCATCAAGGAAGATTAATGTCCTTCCCATCTCAGGCAGCATTTACAGGTCCCATTGATGCTAGCAATCTAAAGATGGAGATGTGA 1038 46.63 MPGTGFNVENAGFESAGILNCSGFEMNHTTSRTSSCPLAAAEAKVRESVLPEKIASAVGRESFKKRKADKVQSPKVVAEEETKDKRIKGCAEDGESKITEANNNKNSTTTTTTTATTTTTNNNNRETSADTSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDNFLAKEVFPACAANFPTIGMSSEMTNPSYLHYDPIQQVATCGVEMGINPAEIALRRTISAPVSIPDTFLDSCFTQIQPSSTWDADLQNLYGPEFHQGRLMSFPSQAAFTGPIDASNLKMEM* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3488693 3491726 - Vvi3g377 Vvi3g377 784052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g377 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Vvi3g377 345 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Vvi3g377 345 SMART finulus 157 207 IPR011598 GO:0046983
Vvi3g377 345 MobiDBLite consensus disorder prediction 100 135 - -
Vvi3g377 345 Gene3D - 148 222 IPR036638 GO:0046983
Vvi3g377 345 MobiDBLite consensus disorder prediction 64 135 - -
Vvi3g377 345 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 2 325 - -
Vvi3g377 345 CDD bHLH_AtBPE_like 141 226 - -
Vvi3g377 345 MobiDBLite consensus disorder prediction 64 99 - -
Vvi3g377 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 220 IPR036638 GO:0046983
Vvi3g377 345 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 325 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g377 Vvi4g947 ECH
Vvi3g377 Vvi4g985 ECH
Vvi3g377 Vvi18g927 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14649 PF00010 HLH 1.80E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g377 - - vvi:100252098 667.151