Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g378 ATGAAAGCCCAACCCACATCCTCACTCCTAGACAACAGAGAGAGAGAGAAGAGAATGGGTAGAAACACAATTTCTTTCTGTTCCATTTTTCTCATTTGGGCATTGTTTCTTGATTGGGGTTTGTTGCGGCGATATGTAGCTGCGGATGATGGTGGGGTGGTGAAAAGGGAAGGGTTTGAGATTATAATTGGCGGTGGCTATAGTCCACCTCCTGAGTATGAAGAAGGCTGTCCACCTCCCCCTCCTGAGCCTGAATGCCCCCCACCTCCACCTCCATCTCCACCTCCACCTCCACCTCCATCTCCACCTCCACCTCCATCTCCACCTCCACCTCCACCTCCATCTCCACCTCCACCTCCATCTCCACCTCCACCTCCACCTCCATCTCCACCTCCACCCCCTCCTCCACCCCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCGCCTCCGCCTCCTCCTCCTCCACCAGTCGATCGCAATGCGAGACTTAAAATTGCTCTAAAAGCAATCAGGATATTCCAAGCCAAAATCACGGTAGATCCTTTTAATATCGCCAAGGGATGGAAGGGCAACAATCCTTGCAAATTCAAGGGCTTCGTCTGCAGTACTGTCCCGGACAAGAACCTGAACGCAGTCGCCGGAGTAGACTTCAATGGCTTTAACTTCGGAGGCCCCAACCTCGCTCTTGACGGCTTCCTTAACGGGTTACCAGACATAACCATCTTCCACGCCAATTCCAACGACTTCAACGGCCCCATCCCACGCAGCATCGGCCGATCCAAAAACCTTCTCGAGGTCCTTTTCCTCAACAACCAGCTGTCAGGGTGCTTGCCCTACGAGATAGGATATTTGAAAGACGCCACAGTGTTTGACGTTGGTTTCAACCAGTTAACTGGCCCAATCCCGCATTCATTCGGCTGCTTGGACAGCATTCAGATCCTTAACTTGGCCGCAAACCAGTTCTACGGGCCTGTCCCTGAAACTCTCTGCGAGCTGCCCAACCTCTACAACCTAGCATGCCTGTTCTCATTTCTTCTCCCAAGTCAGGCAATGCCCTGA 1065 53.05 MKAQPTSSLLDNREREKRMGRNTISFCSIFLIWALFLDWGLLRRYVAADDGGVVKREGFEIIIGGGYSPPPEYEEGCPPPPPEPECPPPPPPSPPPPPPPSPPPPPSPPPPPPPSPPPPPSPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVDRNARLKIALKAIRIFQAKITVDPFNIAKGWKGNNPCKFKGFVCSTVPDKNLNAVAGVDFNGFNFGGPNLALDGFLNGLPDITIFHANSNDFNGPIPRSIGRSKNLLEVLFLNNQLSGCLPYEIGYLKDATVFDVGFNQLTGPIPHSFGCLDSIQILNLAANQFYGPVPETLCELPNLYNLACLFSFLLPSQAMP* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3554243 3555820 + Vvi3g378 Vvi3g378 784053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g378 354 PANTHER BNAC05G26270D PROTEIN 249 341 - -
Vvi3g378 354 PANTHER BNAC05G26270D PROTEIN 49 256 - -
Vvi3g378 354 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 49 256 - -
Vvi3g378 354 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 249 341 - -
Vvi3g378 354 MobiDBLite consensus disorder prediction 64 140 - -
Vvi3g378 354 SUPERFAMILY L domain-like 179 338 - -
Vvi3g378 354 PRINTS Proline rich extensin signature 69 81 - -
Vvi3g378 354 PRINTS Proline rich extensin signature 83 99 - -
Vvi3g378 354 PRINTS Proline rich extensin signature 103 115 - -
Vvi3g378 354 PRINTS Proline rich extensin signature 115 136 - -
Vvi3g378 354 MobiDBLite consensus disorder prediction 72 140 - -
Vvi3g378 354 Gene3D Ribonuclease Inhibitor 169 343 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g378 - - - vvi:100241832 251.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g378 Vvi18g728 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90