Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g379 ATGGCAATCCTCGCCTCCTCATCTCTCAATCGTCTAATCCGAATTCTGCTACTCCACCTACCATGGTTCCTCTGTGTAATCTGCCAGAGAACAAGACATGGAACCCCACCACCATCATTCGTATTTCCTCCTCCACCACCGCCTCCTTCGCCACCGCCTCCTTCACCACCGCCACCTTCACCATTACCTTCAGAACCACCAGTAGTACCACCAGTAGCACCACCAGTAATCTTCCCGGACCTGCGCCTCGCCACCGTTTTCCCCGTGATCCAAAAGTTCAAGGCCAGCATCACCTCCGACCCTCTTGGAATCACCTCTACATGGGTCGGTGGAGACATCTGCAAATACAAGGGCTTCTACTGCGACAACCCACCAGATAACTCCACCTCCCTGGCACTTGCCGGCATCGATTTCAATGGCTTCCAGCTGGCTGCACCTAGCCTGGATGGCTTCATTGATGCCCTTCCTGATCTAGCAATCTTCCATGCAAACACCAACTTCTTCAGCGGCAACATCACCCCCAAAATCGCCAAGCTGCCATACTTCTACGAGCTGGACCTCAGTAACAACAAGTTCTCCGGCGAGTTCCCTCCGACGGTGCTCGCCATCCCCGGCTTATCCTTCTTGGACATTCGTTATAACTCGTTTTCCGGGTCTGTCCCACCTCAGGTTTTCGTACAGAATCTCGATGTCCTCTTCATCAACAACAATAACTTCAACCAGAAAATCCCTGATGACTTCGGAAACACTCCGGCAAGGTACATAACGTTCGCAAACAACAAGTTCACCGGTCTGATACCGCGCAGCATCGGAAACTCTTCATCGACATTGACTGAAATCCTTTTTCTCAATAACTTCTTATTTGGGTGTCTTCCAATTGAAATAGGCTCTCTGAAAGAGCTGACAGTTTTCGACGTGGGCCATAACTTACTGACGGGCCTTTTGCCGTGCTCGCTGGGGTGTTTACATAACGCGGAGCAGCTCAACTTCGCCGGAAACTTTTTCTACGGTAGAGTGCCTGAAGAGTTGTGTGCATTGAAAAACCTTCAGAATTTGACTTTGTCGGATAATTATTTTACGAAAATAGGGCCAAACTGCAGAGATCTGATACCAACTGGGAAAATTGATCTGAGGAACAATTGCATTCGTAATCTTCCTGATCAGAGACCAAGATCTGATTGTCTGGCCTTCTTTTTGAAACCCAAGTTTATTTGCCCGAATATGGTCTTGTATGAAAATAATACTTGTGATGATGGTCAATTGCAATCAACTCATATGAGGTCCAGGAAACCGAATATTCCAAAGGTTACTTACTCTGCGCTTGTGAAGCATCGTTAG 1338 48.13 MAILASSSLNRLIRILLLHLPWFLCVICQRTRHGTPPPSFVFPPPPPPPSPPPPSPPPPSPLPSEPPVVPPVAPPVIFPDLRLATVFPVIQKFKASITSDPLGITSTWVGGDICKYKGFYCDNPPDNSTSLALAGIDFNGFQLAAPSLDGFIDALPDLAIFHANTNFFSGNITPKIAKLPYFYELDLSNNKFSGEFPPTVLAIPGLSFLDIRYNSFSGSVPPQVFVQNLDVLFINNNNFNQKIPDDFGNTPARYITFANNKFTGLIPRSIGNSSSTLTEILFLNNFLFGCLPIEIGSLKELTVFDVGHNLLTGLLPCSLGCLHNAEQLNFAGNFFYGRVPEELCALKNLQNLTLSDNYFTKIGPNCRDLIPTGKIDLRNNCIRNLPDQRPRSDCLAFFLKPKFICPNMVLYENNTCDDGQLQSTHMRSRKPNIPKVTYSALVKHR* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3567876 3569214 + Vvi3g379 Vvi3g379 784054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g379 445 Gene3D Ribonuclease Inhibitor 253 400 IPR032675 -
Vvi3g379 445 SUPERFAMILY L domain-like 94 383 - -
Vvi3g379 445 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 443 - -
Vvi3g379 445 PANTHER SCOPOLETIN GLUCOSYLTRANSFERASE 11 443 - -
Vvi3g379 445 MobiDBLite consensus disorder prediction 38 66 - -
Vvi3g379 445 Gene3D Ribonuclease Inhibitor 88 246 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g379 - - - vvi:100246963 813.527
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g379 Vvi18g728 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003062 1 2 0 1 1 1 2 2 2 2 2 1 1 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 52