Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g38 ATGGAGGAGGAAGACGACGCTTTAAACGACGGCTACAAACCGCCCTCTCCACGGCAAGGGGACTCGGCCATTGGTGACGAAGTGCTTCCGCAAAGCATCGACCAATGCGACGTCGTTTCAGAGCTGGACGATTCGCAGCTTGTGGGCGCCGCGTCTCCTGCTGCTGTTGCGGAGCCGGAGGAGGAAGAGGACGTGGAGGCGATCGCGGGAGAGGAGGCGGAGGCGGAGGCAGAGGCTGAGGCGGAGGCGGAGGCCGGCGTGGAGGTCGCGGAGGGAGGTCGAGGCGGCGGGGGCAGGAGGAAGAGGGGCCGGAATCCTAGGGTTCCAGCGCGGGCTCCGCTGAAGAAGTCGTTTGAGGAGGACGTTTGCTTCATTTGCTTCGATGGCGGTGATCTTGTGCTCTGTGATCGCAGGGGATGCCCTAAGGCCTACCATACTACGTGTGTTAATCGTGACGAGGAATTCTTTCGAGCCAAGGGCAAATGGAATTGTGGTTGGCATCAATGTACTGCTTGTGAGAAGAATTCCTATTATATGTGTTTGACATGTCCATTTTCCTTGTGCAAGAACTGCATCAAAGATTCTGTTATCTTTTGTGTTAGAGAAAACAAAGGCTTCTGTGAGGCATGCATGAAAATTATCATGTTGATTGAAAAAAATGAGCAGGGAAACAAGGAAATGGATCAAGTTGATTTCGATGACAAAAGTAGCTGGGAGTTCCTCTTCAAGGATTACTGGATAGATTTAAAAGGAAGGCTATCTCTAACATCAGATGAACTTGCTCAGGCTAAAAATCCGTGGAAAGGGTCTGATGCACCTGCTGGAAAACAGGAAGCACCGGATGAACCCAATGATGTTTACAATGATGGTGGTCCTGGTTCAGACAGTTCCTCTGGAAATGTAGAAGCAAGGAAGCCCAAAAGAAGAAAGGCCAAGAAACGGTTGAAGTCACTCAATAAGGAGAGGGATTCACCGAGTGTAGCAACAGCAATTGGAGCAGAAGGAACGTCTACGCCTGCCAACACTGAGTGGGCATCAAAAGAGCTCTTGGAGTTTGTTATGCATATGAAGAATGGGGACAAATCCGTTACAAGTCAGTTTGATGTACAAGCCCTCTTGCTAGAATATATAAAAAGAAACAAACTTCGTGATCCTCGCCGAAAAAGTCAAATAATTTGCGATTCAAGACTTGAATATCTTTTTGGAAAACCACGTGTTGGGCATTTTGAAATGTTAAAACTTCTTGAGTCTCACTTTCTTAATAAAGAGGATTCACAGACAGATGATCTACAAGGGAGTGTTGTTGATAGTGAAGCTAGTCAGTTGGAGGTTGATGGTAATACCGACACCCTAATGAAAGTGGGTAAAGATAGGAGACGTAAAGCACGTAAAAAGGGTGATGAGAGAGGATCTCAATCAAATCTTGATGATTATGCAGCTATTGATATCCACAACATTAGCTTAATTTATTTACGGCGTAATTTGATGGAGGATTTAATTGAAGATACTGAAAAGTTACATGACAAGGTGGTTGGTGCTTTTGTGAGAATAAGGATTTCCGGTAGTGGACAAAAGCAAGATGTGTATAGGCTAGTCCAAGTTGTAGGTACAAGCAAAGCAGCTGATCCATATAAAGTTGGCAAAAGGACAACAGAAGTTATGCTAGAAATTTTAAATTTAAGCAAGACAGAAATCATATCAATTGATATAATTTCAAATCAGGAGTTCACTGAGGACGAATGTATGCGTCTACGTCAGAGTATAAAATGTGGATTAATCACCCCATTGACAGTGGGTGGCATTCTGGAAAAAGCGTTAGCACTTCAAGCAGTCAGAGTCAAGGATTGGCTGGAAACAGAGATTGTGCGGCTTAGTCATCTTCGCGATCGAGCTAGTGAAAAGGGGCGCAGAAAGGAATATCCTTTTTTTGTTCAGCTTATGCATAGTTCTATTATCATCTTGAATATGCAAGTGGCTTCTTGTTATCATATGTCCTATTTTCTTAAGACATTGCCTTTCTGGGAATGTGTCGAGAAATTGCAGCGTTTGAAGACAGCTGAGGAGCGCCAGCGCAGGCTTGAGGAAATTCCAGAAGTCCATGCAGACCCAAATATGGATCCAAGTTACGAGTCTGAGGAAGATGAAAGTGAGACAGATGACAAGAGACAAGAAAATCATTTGAGACCAAGAGATACAGGCTTTAGCAGGAAGAGGATGGAACCTAGCTCTTCAAGGAAAGGAGATTCTGGTTCAAATTATTCCTGGAGTACACCAACAAAAAATTCTAGTAGAAACTGGGAATTCAGCAGAACCCATTCAGTGGGAAGGTCTGAATCATTTTCTGGAGTTGCATTAGAAAGTTCCTCCGGACCTCCCTTGACAGGGGTAGAACCAACTGCTGCCAAACTCAGTGAAACGGACAAAATGTGGCATTACCAAGATCCTTCTGGAAGAGTCCAAGGACCATTTTCTCTGGTGCAGCTGCGGAAATGGAGTAATAGTGGGTTCTTCCCCAAGGATCTCAGAATTTGGAGAACTACTGAAAAGCAGGATGACTCTGCACTTTTGACTGACGTATTCCATATGAATCATCCTTGCAGCAAGTAG 2607 44.84 MEEEDDALNDGYKPPSPRQGDSAIGDEVLPQSIDQCDVVSELDDSQLVGAASPAAVAEPEEEEDVEAIAGEEAEAEAEAEAEAEAGVEVAEGGRGGGGRRKRGRNPRVPARAPLKKSFEEDVCFICFDGGDLVLCDRRGCPKAYHTTCVNRDEEFFRAKGKWNCGWHQCTACEKNSYYMCLTCPFSLCKNCIKDSVIFCVRENKGFCEACMKIIMLIEKNEQGNKEMDQVDFDDKSSWEFLFKDYWIDLKGRLSLTSDELAQAKNPWKGSDAPAGKQEAPDEPNDVYNDGGPGSDSSSGNVEARKPKRRKAKKRLKSLNKERDSPSVATAIGAEGTSTPANTEWASKELLEFVMHMKNGDKSVTSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLEYLFGKPRVGHFEMLKLLESHFLNKEDSQTDDLQGSVVDSEASQLEVDGNTDTLMKVGKDRRRKARKKGDERGSQSNLDDYAAIDIHNISLIYLRRNLMEDLIEDTEKLHDKVVGAFVRIRISGSGQKQDVYRLVQVVGTSKAADPYKVGKRTTEVMLEILNLSKTEIISIDIISNQEFTEDECMRLRQSIKCGLITPLTVGGILEKALALQAVRVKDWLETEIVRLSHLRDRASEKGRRKEYPFFVQLMHSSIIILNMQVASCYHMSYFLKTLPFWECVEKLQRLKTAEERQRRLEEIPEVHADPNMDPSYESEEDESETDDKRQENHLRPRDTGFSRKRMEPSSSRKGDSGSNYSWSTPTKNSSRNWEFSRTHSVGRSESFSGVALESSSGPPLTGVEPTAAKLSETDKMWHYQDPSGRVQGPFSLVQLRKWSNSGFFPKDLRIWRTTEKQDDSALLTDVFHMNHPCSK* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 533513 544910 - Vvi3g38 Vvi3g38 783713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g38 868 ProSitePatterns Zinc finger PHD-type signature. 123 183 IPR019786 -
Vvi3g38 868 Gene3D - 808 868 IPR035445 -
Vvi3g38 868 MobiDBLite consensus disorder prediction 446 472 - -
Vvi3g38 868 ProSiteProfiles SWIB/MDM2 domain profile. 338 421 IPR003121 -
Vvi3g38 868 SUPERFAMILY SWIB/MDM2 domain 342 424 IPR036885 -
Vvi3g38 868 MobiDBLite consensus disorder prediction 693 798 - -
Vvi3g38 868 SUPERFAMILY FYVE/PHD zinc finger 119 172 IPR011011 -
Vvi3g38 868 MobiDBLite consensus disorder prediction 745 794 - -
Vvi3g38 868 Coils Coil 676 696 - -
Vvi3g38 868 ProSiteProfiles Zinc finger PHD-type profile. 120 186 IPR019787 -
Vvi3g38 868 CDD GYF 807 860 IPR003169 GO:0005515
Vvi3g38 868 CDD SWIB-MDM2_like 344 419 - -
Vvi3g38 868 MobiDBLite consensus disorder prediction 1 31 - -
Vvi3g38 868 ProSiteProfiles Plus3 domain profile. 480 613 IPR004343 GO:0003677
Vvi3g38 868 SUPERFAMILY Plus3-like 481 609 IPR036128 GO:0003677
Vvi3g38 868 Pfam GYF domain 810 850 IPR003169 GO:0005515
Vvi3g38 868 SMART rtf1 480 590 IPR004343 GO:0003677
Vvi3g38 868 MobiDBLite consensus disorder prediction 49 109 - -
Vvi3g38 868 SMART PHD_3 122 168 IPR001965 -
Vvi3g38 868 SMART swib_2 363 424 IPR019835 -
Vvi3g38 868 SUPERFAMILY GYF domain 802 862 IPR035445 -
Vvi3g38 868 MobiDBLite consensus disorder prediction 719 744 - -
Vvi3g38 868 Pfam SWIB/MDM2 domain 346 419 IPR003121 -
Vvi3g38 868 SMART gyf_5 808 863 IPR003169 GO:0005515
Vvi3g38 868 CDD PHD5_NSD 122 167 - -
Vvi3g38 868 MobiDBLite consensus disorder prediction 693 707 - -
Vvi3g38 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 214 IPR013083 -
Vvi3g38 868 ProSiteProfiles GYF domain profile. 807 861 IPR003169 GO:0005515
Vvi3g38 868 PANTHER UNCHARACTERIZED 57 773 - -
Vvi3g38 868 PANTHER UNCHARACTERIZED 748 860 - -
Vvi3g38 868 Gene3D SWIB/MDM2 domain 334 429 IPR036885 -
Vvi3g38 868 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 748 860 - -
Vvi3g38 868 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 57 773 - -
Vvi3g38 868 Pfam Plus-3 domain 485 588 IPR004343 GO:0003677
Vvi3g38 868 Gene3D - 481 610 IPR036128 GO:0003677
Vvi3g38 868 MobiDBLite consensus disorder prediction 57 85 - -
Vvi3g38 868 MobiDBLite consensus disorder prediction 264 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g38 - - - vvi:104878757 1445.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g38 Vvi4g1077 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14650 PF03126 Plus-3 4.60E-23 No_clan Vvi TR