Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g383 ATGGAGTCGATCACCTTCTCTGATCTCCACGTCATCGCTGGACCCTCCGTAACTCCCCACGGAGCCCGAGGAGGATCTCCCTCTCTTTCTAGAACCTTCTTCTCTCCCTCTCGATTTCGCTCCCCTGTTCCCCTTGTCGCTCTTCGCCGTCGCCCTGCTCACGCCGCCATCACTACTAACTCCGTTCCGCATAGAAATGGAACATATAGAGTTGGTGATTTTATGACAAAAAAGGAGCATTTACATGTTGTAAAACCTACAACCCCTGTTGATGAAGCATTAGAAGCTCTTGTGGAGAAAAAAATTACTGGCTTTCCTGTGATTGATGAAGATTGGAAATTGGTTGGTCTTGTTTCTGATTATGATTTGTTAGCACTTGACTCCATATCAGGTGGTGCTCAAATTGACACAACCCTGTTTCCTGATGTTGATAGTTCTTGGAAGGCGTTCAATCAGATACAGAAACTCCTTGCTAAAACTAAGGGGAAAGTTGTTGGTGATGTGATGACACCTGCTCCAGTTGTTGTTCATGAAACCACCAACCTTGAAGATGCTGCTAGGTTATTGCTCGAAACAAAGTACCGCCGGTTGCCTGTAGTAGATGGTGATGGCAAGCTGGTTGGAATTGTCACAAGGGGAAGTGTTGTTAGGGCTGCCCTCAAGATAAAAGGTACTAGAGAAAAGTTGCCATGA 693 45.89 MESITFSDLHVIAGPSVTPHGARGGSPSLSRTFFSPSRFRSPVPLVALRRRPAHAAITTNSVPHRNGTYRVGDFMTKKEHLHVVKPTTPVDEALEALVEKKITGFPVIDEDWKLVGLVSDYDLLALDSISGGAQIDTTLFPDVDSSWKAFNQIQKLLAKTKGKVVGDVMTPAPVVVHETTNLEDAARLLLETKYRRLPVVDGDGKLVGIVTRGSVVRAALKIKGTREKLP* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3594412 3603340 - Vvi3g383 Vvi3g383 784058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g383 230 Gene3D - 66 225 IPR046342 -
Vvi3g383 230 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 27 227 - -
Vvi3g383 230 SMART cbs_1 172 220 IPR000644 -
Vvi3g383 230 SMART cbs_1 80 128 IPR000644 -
Vvi3g383 230 ProSiteProfiles CBS domain profile. 75 137 IPR000644 -
Vvi3g383 230 SUPERFAMILY CBS-domain pair 63 218 IPR046342 -
Vvi3g383 230 CDD CBS_pair_plant_CBSX 77 218 - -
Vvi3g383 230 ProSiteProfiles CBS domain profile. 169 227 IPR000644 -
Vvi3g383 230 Pfam CBS domain 165 219 IPR000644 -
Vvi3g383 230 Pfam CBS domain 71 125 IPR000644 -
Vvi3g383 230 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE 27 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g383 - - - vvi:100257224 435.261
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g383 Vvi7g1030 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106