Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g384 ATGGCGGCACAGGTTCAAGTTCAGCCTCAGGGTCCGGGACCCGCTCCCAACGGCGCGGCTGGCGCCGGTGGCAATCAGTTCGTAACGACGTCGTTGTATGTCGGCGACCTGGAGTTGAATGTCAACGATTCGCAGCTGTACGATCTGTTTAGCCAAATGGGAGCGGTGGTTTCCGTTCGGGTTTGCCGCGACTTGAGCACTCGAAGATCACTCGGTTATGGTTATGTTAATTATAGCAATCCCCAAGACGAAAAAGAAAAAGAAACAATCTACGAGGGCTTTTGTGTATTTTGTTTGATTCCATCGAATTATGCCATTTTCTTTGTGCTAGGGTTTAGTTATATCCATAAAAAGAGGAGAGGAAAGGAAAGAGGGGGGGAACTTCAAAAAAGAGAACTGAATTTTTTAAGAGTGGGTGGTGAAATGGCAGAGGTTCAAGATCATGAGGGTCTTCTATCTGGTACAAATGATGAGCCAAACATTGGACCTAGCAGGTTTGCATCAGCATCATTGTATGTGGGAGATCTGGATTTGAATGTGACTGATTCCCAGCTTCACGATCTCTTTAGCCAATTAGCTCAGGTGGTTTCCATTAGGGTTTGTCGAGACTCGACCACTCACAGATCACTTGGTTACGGTTATGTTAATTATACGGACCTCGAAGATGCTGCAAGGGCATTGGATGTGTTGAATTTCACTCCTCTCAATGGAAAGCCAATTAGGATTATGTATTCCCATCGTGACCCTAGTATCCGCAAAAGTGGAACTGGAAATATATTTATTAAGAATTTGGATAAAGGGATTGACCACAAAGCATTGCATGACACTTTTTCCGCATTTGGTAACATTCTCTCATGTAAGGTAGCCACTGATGCATCTGGAATGTCAAAAGGCCATGGTTTTGTACAATTTGATAGTGAGGAGGCTGCCCAGAAAGCAATTGACAAGCTGAATGGCATGCTTTTGAATGATAAGCAAGTTTTTGTGGGACCGTTTGTTCGTAAGCAGGAACGGGAGAGTACAATCAACAAGGAAAAATTCAATAATGTGTTTGTGAAAAATATCTCTGAAGGAATGACAGAAGAAGATCTGACGAGAATTTTTGGTGAATTTGGGCCAATCACTAGTGTTGTGGTGATGAGAGATGGTGATGGAAAATCAAAGTGCTTTGGATTTGTCAACTTTGAGAATGTGGATGATGCTGCTATGTCTGTTGAGGCTCTTAATGGGCAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAAAAATCTGAAAGGGAAATTGAATTAAAAAGTCGATTTGAACAGAATATGAAGGAGGCAGTTGACAAATTTCAAGGAGCAAACCTCTACATCAAAAATTTAGATGATAGCATTGGTGATGATAAACTAAAGGAATTGTTTGCTCAGTTTGGTACAATTACTTCATGCAAGGTTATGCGAGATCCCAATGGTTTAAGTAGAGGATCAGGGTTTGTTGCATTCTCATCTCCTGAGGAGGCATCTAGAGCTCTTGCTGAGATGAATAGCAAAATGGTTGTTAGCAAACCTTTATATGTTGCCCTTGCGCAACGTAAAGAAGATAGAAGAGCAAGGTTGCAGGCTCAATTTTCTCAAATGCGTCCTGTTCCAATGCCACCTTCCGTTGTTCCTCGTTTGCCAATGTATCCACCCAGTGGTCCTGGTCTTGGACAACAAATGTTCTACGGTCAAGCGCCACCTGCTATTATTCCTCCTCAACCTGGATTTGGGTATCAACAACAGCTTGTTCCTGGCATGAGGCCTGCTGGACCTCCTATGCCGAATTTCTTTGTGCCAATTGTTCAACAGGGGCAGCAGGGTCAGCGTCCAGGTGGCAGACGTGCTGGAGCTGTTCCTATGCAACAAACCCAGCAGCAAGTTCCCCTGATGCAGCAGCAGATGCTTCCAAGGGGGCGTGTCTTCCGCTACCCTCCAGGGCGTGGTCTATCCGATGTTCCAATGCCAGCAATATCTCAATCAATACCAGTCGGGGCTTTGGCTACGGCCCTTGCAAATGCTCCTCCTGCTGAGCAGCGGACGATGCTGGGTGAGAATTTATACCCACTTGTGGAGCAGCTGGAGCCTGAGATGGCAGCCAAAGTGACTGGCATGCTTCTTGAGATGGACCAGACCGAGGTCTTGCACTTGCTCGAGTCCCCTGATGCTCTGAAAGCCAAGGTTGCAGAGGCTATGGAGGTTCTGAGGAATGTGGCTCAGCAGCAGCAGGCTACCAATGCAGCTGATCAGTTGGGTTCTTTGTCTCTAGAATGA 2301 45.55 MAAQVQVQPQGPGPAPNGAAGAGGNQFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETIYEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHEGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVPMPAISQSIPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQATNAADQLGSLSLE* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3610207 3626250 + Vvi3g384 Vvi3g384 784059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g384 766 Gene3D - 258 330 IPR012677 -
Vvi3g384 766 SUPERFAMILY PABC (PABP) domain 635 764 IPR036053 GO:0003723
Vvi3g384 766 CDD RRM3_I_PABPs 347 426 - -
Vvi3g384 766 Gene3D - 334 433 IPR012677 -
Vvi3g384 766 Gene3D - 434 540 IPR012677 -
Vvi3g384 766 Gene3D - 668 751 - -
Vvi3g384 766 SUPERFAMILY RNA-binding domain, RBD 18 83 IPR035979 GO:0003676
Vvi3g384 766 PANTHER RNA BINDING PROTEIN 160 751 - -
Vvi3g384 766 PANTHER RNA BINDING PROTEIN 20 80 - -
Vvi3g384 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 329 IPR000504 GO:0003723
Vvi3g384 766 PANTHER POLYADENYLATE-BINDING PROTEIN 2 20 80 - -
Vvi3g384 766 PANTHER POLYADENYLATE-BINDING PROTEIN 2 160 751 - -
Vvi3g384 766 CDD RRM1_I_PABPs 170 249 - -
Vvi3g384 766 Gene3D - 156 257 IPR012677 -
Vvi3g384 766 SMART rrm1_1 452 524 IPR000504 GO:0003723
Vvi3g384 766 SMART rrm1_1 170 243 IPR000504 GO:0003723
Vvi3g384 766 SMART rrm1_1 258 330 IPR000504 GO:0003723
Vvi3g384 766 SMART rrm1_1 349 421 IPR000504 GO:0003723
Vvi3g384 766 SMART rrm1_1 31 99 IPR000504 GO:0003723
Vvi3g384 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 451 528 IPR000504 GO:0003723
Vvi3g384 766 SUPERFAMILY RNA-binding domain, RBD 169 338 IPR035979 GO:0003676
Vvi3g384 766 SUPERFAMILY RNA-binding domain, RBD 347 530 IPR035979 GO:0003676
Vvi3g384 766 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g384 766 Gene3D - 2 86 IPR012677 -
Vvi3g384 766 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 169 745 IPR006515 GO:0003723
Vvi3g384 766 CDD RRM4_I_PABPs 450 528 - -
Vvi3g384 766 CDD RRM2_I_PABPs 255 331 IPR045305 -
Vvi3g384 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 247 IPR000504 GO:0003723
Vvi3g384 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 83 IPR000504 GO:0003723
Vvi3g384 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 241 IPR000504 GO:0003723
Vvi3g384 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 453 521 IPR000504 GO:0003723
Vvi3g384 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 326 IPR000504 GO:0003723
Vvi3g384 766 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 418 IPR000504 GO:0003723
Vvi3g384 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 425 IPR000504 GO:0003723
Vvi3g384 766 SMART rrm2_1 170 243 IPR003954 GO:0003676
Vvi3g384 766 SMART rrm2_1 452 524 IPR003954 GO:0003676
Vvi3g384 766 SMART rrm2_1 258 330 IPR003954 GO:0003676
Vvi3g384 766 SMART rrm2_1 349 421 IPR003954 GO:0003676
Vvi3g384 766 Pfam Poly-adenylate binding protein, unique domain 680 744 IPR002004 GO:0003723
Vvi3g384 766 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 83 IPR000504 GO:0003723
Vvi3g384 766 SMART poly_2 684 747 IPR002004 GO:0003723
Vvi3g384 766 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 672 749 IPR002004 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g384 Vvi4g943 ECH
Vvi3g384 Vvi18g736 ECH
Vvi3g384 Vvi7g1031 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g384 K13126 - vvi:100241923 1080.47