Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g385 ATGGAGATCGCGCCGGCGGTGCTGGAAGCCAAGGCCAACGAGAACGACAACCCCACCACCGTCTCTGTCGACAGCCTCAAAGCTTCTTCTTCGTCGTTATCATCGCCTCGCAGCTCGCCGGAAGATGAAACGAGATCCCCAGGGAAATATGACGAGGAGGAGGACGAGGGGGACGTTTGCCGCATCTGCCGAAATCCCGGTGACGCAGAGAACCCGCTCCGGTACCCTTGTGCGTGTAGCGGTAGCATAAAGTTTGTTCATCAGGATTGTCTCCTTCAGTGGCTCAATCACAGCAACGCTCGTCAATGCGAGGTTTGCAAATATGCATTTTCGTTCTCCCCTGTGTATGCTGAAAATGCTCCAGCAAGGCTTCCTTTTCAGGAGTTTGTAGTTGGAATGGCAATGAAAGCTTGCCATGTTCTGCAATTCTTTTTGCGCCTTAGTTTTGTACTTTCTGTTTGGCTCCTTATCATACCCTTCATTACATTTTGGATATGGCGATTTTCTTTTGTGAGGAGCTTTGGTGAAGCCCAGAGATTGTTCTTGAGTCATTTATCTACTACAGTTATTCTTACTGATTGTCTACATGGATTCCTGCTATCTGCAAGCATTGTTTTCATATTTCTTGGAGCCACTTCTTTGAGGGATTATGTTAGACATTTAAGAGAGCTTGGGGGACCAGATGCAGAAAGGGAAGATGAAGGTGAAAGAAATCCTCGTGCTGCAAGAAGACCTCCTGGACAAGCTAATAGGAATTTTGCGAGGGAAGGAAATGGTGAAGATGCTGGTGGAGCCCAGGGAATTGCTGGAGCAGGGCAACTAGATGGAAGGAACCCAGACAATGTTGCTGTCCGGTGGGAGATGCAGGCAGCTCGCCTTGAAGCTCACGTTGAACAGATGTTTGATGGTCTTGATGATGCTGATGGTGCAGAGGATGTGCCCTTTGATGAGCTTGTTGGCATGCAAGGGCCTGTTTTTCATTTGGTTGAAAATGCTTTTACTGTTCTGGCAAGCAATATGATATTCCTTGGCGTTGTGATCTTTTTGCCCTTTTCATTAGGTCGGGTTATACTCCATTATATATCGTGGCTTTTCTCTTCTGCTACTGGTCCAGTATTGTCAACATTCATGCCACTTACAGAGTCAGCCCTCTCCTTAGCAAATATTACACTGAAGAATGCATTAACTGCTGTAACTGATCTGTCATCTGAAAGCCAAGAAAATGGGCTGCTCGGTCAGGTCGCAGAAATGTTAAAAGTAAACACAAGTGGATTAAATGAAACCTCGAACAACATTAGCATGCCCCTGTCAGCAGATTTCTTGAAAGGGGCAACTATTGGAACATCACGACTTTCTGATGTAACAACGCTTGCTATTGGATACATGTTTGTTTTCTCCCTAATCTTCTTCTACCTCGGCATTGTTGCTTTAATTCGGTATACTAAAGGTGAACCTTTGACCATGGGGAGGTTCTATGGTATCTCTTCAATAGCAGAGACAATCCCATCCCTTTTCAGGCAGTTCTTGGCAGCAATGAGGCACTTAATGACTATGATTAAAGTTGCTTTCCTTCTGGTCATTGAGCTGGGGGTATTTCCTTTAATGTGTGGCTGGTGGCTGGATGTTTGTACCATAAGAATGTTCGGGAAGACTCTTTCTCAAAGAGTCCAATTCTTTTCAGTTTCTCCCCTGGCGAGTTCATTAGTTCATTGGATTGTTGGGATCGTGTACATGCTACAAATAAGCATCTTTGTCAGCCTTCTTCGTGGGGTTTTGCGTAATGGAGTTCTGTACTTTCTTCGAGATCCAGCTGATCCAAACTATAATCCCTTTCGTGATCTAATTGATGATCCTGCACATAAGCATGCTCGCAGGGTTCTGTTATCTGTTGCTGTCTATGGGAGTTTAATAGTGATGCTGGTATTTTTACCAGTCAAACTTGCCATGAGATTGGCTCCCTCCATTTTTCCGCTTGATATTGTTGTCTCCGACCCATTTACTGAGATTCCTGCTGATATGCTTCTCTTCCAAATTTGCATTCCATTTGCTATTGAGCATTTTAAATTGCGGACAACGATCAAATCCTTTCTCCACTATTGGTTTACTGCAGTTGGCTGGGCACTTGGCTTAACAGATTTCTTACTGCCTAGACCTGATGACAATGGTGGACAGGAAAATGCAAATGGGGAACCAGTAAGGCAGGCCCTTTATGCAGTACCAGTAGATGAAATTGCACAACAGGATCAGCCACTAGGGGTACTTGAAGCTGTCGATGATTTAAATGGAAGCATTCATGCATCAGGGAATTCTAATATCACAGATGAGTATGATGCTGATGATCAATCTGATTCAGAGTACGGCTTTGTGCTTCGTATTGTCCTTTTGTTGGTGGTGGCTTGGATGACTCTACTTATCTTTAACTCCGCCTTGATAGTTGTACCTATTTCACTTGGACGAGCGCTCTTCAATGGCATTCCTCTTCTCCCAATAACTCATGGCATCAAGTGCAATGATTTATATTCTTTCATCATTGGAAGCTATGTCATTTGGACTGCTCTAGCTGGAGTCAGGTATTCCATTGAGCACATCAAAACAAGGAGGGCTGTAGTTCTGTTGAGCCAAATGTGGAAGTGGTGTGTCATTGTTATTAAGAGTTCTGTTCTGTTGTCAATATGGATATTTGTCATCCCAGTATTAATTGGACTGCTGTTTGAGCTTCTGGTAATTGTGCCAATGCGGGTGCCTGTGGATGAAAGCCCTGTGTTCCTCTTGTATCAGGACTGGGCATTGGGACTCATCTTTCTTAAGATCTGGACTAGACTGGTTATGTTGGATCATATGATGCCCTTGGTGGATGAGAGTTGGCGAATAAAATTTGAAAGAGTGAGAGAAGATGGTTTCTCCAGGCTGCAGGGCCTTTGGGTGCTAAGGGAGATTGTGTTCCCAATCATAATGAAGCTGCTGACAGCCCTGTGTGTTCCTTACGTTTTAGCCAGAGGGGTGTTCCCTGTGCTTGGGTATCCACTAGTAGTTAACTCGGCTGTCTATAGGTTTGCTTGGCTGGGTTGCCTCTGCTTCAGCCTGTTGTGCTTTTGTGCCAAGCGATTCCATGTATGGTTCACCAACCTCCACAATTCAATACGTGATGATCGCTATTTGATTGGCCGTAGGCTTCATAACTATGGAGAGGACACAGAAGGCAAGCAAAATGAGGTTGAAGATATTCCCTCGGAAACACAAAGTGCTAATTTGCATGGCACTGCTTTAATTCGACATGACAGAGAAGCTGACATAGGAATGAGGCTGAGGCGTGCTAATCGACATGATGCCTAA 3333 44.7 MEIAPAVLEAKANENDNPTTVSVDSLKASSSSLSSPRSSPEDETRSPGKYDEEEDEGDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKYAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRFSFVRSFGEAQRLFLSHLSTTVILTDCLHGFLLSASIVFIFLGATSLRDYVRHLRELGGPDAEREDEGERNPRAARRPPGQANRNFAREGNGEDAGGAQGIAGAGQLDGRNPDNVAVRWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRVILHYISWLFSSATGPVLSTFMPLTESALSLANITLKNALTAVTDLSSESQENGLLGQVAEMLKVNTSGLNETSNNISMPLSADFLKGATIGTSRLSDVTTLAIGYMFVFSLIFFYLGIVALIRYTKGEPLTMGRFYGISSIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTLSQRVQFFSVSPLASSLVHWIVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPAHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRLAPSIFPLDIVVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSFLHYWFTAVGWALGLTDFLLPRPDDNGGQENANGEPVRQALYAVPVDEIAQQDQPLGVLEAVDDLNGSIHASGNSNITDEYDADDQSDSEYGFVLRIVLLLVVAWMTLLIFNSALIVVPISLGRALFNGIPLLPITHGIKCNDLYSFIIGSYVIWTALAGVRYSIEHIKTRRAVVLLSQMWKWCVIVIKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRIKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLCFSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEDTEGKQNEVEDIPSETQSANLHGTALIRHDREADIGMRLRRANRHDA* 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3628435 3643357 - Vvi3g385 Vvi3g385 784060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g385 1110 PANTHER SSM4 PROTEIN 47 1051 - -
Vvi3g385 1110 SMART ringv_2 59 107 IPR011016 GO:0008270
Vvi3g385 1110 MobiDBLite consensus disorder prediction 227 276 - -
Vvi3g385 1110 CDD RING_CH-C4HC3_MARCH6 59 108 - -
Vvi3g385 1110 SUPERFAMILY RING/U-box 56 110 - -
Vvi3g385 1110 Pfam RING-variant domain 60 106 IPR011016 GO:0008270
Vvi3g385 1110 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 47 1051 - -
Vvi3g385 1110 MobiDBLite consensus disorder prediction 227 241 - -
Vvi3g385 1110 ProSiteProfiles Zinc finger RING-CH-type profile. 52 113 IPR011016 GO:0008270
Vvi3g385 1110 ProSiteProfiles Zinc finger RING-type profile. 60 107 IPR001841 -
Vvi3g385 1110 MobiDBLite consensus disorder prediction 1 53 - -
Vvi3g385 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 118 IPR013083 -
Vvi3g385 1110 MobiDBLite consensus disorder prediction 13 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g385 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - vvi:100262331 2176.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g385 Vvi7g1033 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39