Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g386 ATGTATTTGGAAGGACATGAAGAAGAGATGCCTCTAACAGAGACATTAGGTCTAGAGGGATCCATGAAAAACCTAAATGAGAAGCTTGCTGCTGTTGTGGATGAATCTAAAACTAAAGACGATCTTGTGACCAAATATGCAAGAATGGCAGAAGAAGCCATTGCAGGTCGGGAGAAGGCAGAAGCAGAAGCATTGTCTTTGAAACAAGAATTAGATGAAGCGTTAAATCTGGGTGTAGCTGCAAAAGAAAGGTTAAGTCACTTGGATGCTGCACTGAAGCAATGTATGCAGCAGTTAACTTCTCTAAAAGAAGAACAGGAGCAAAGAATTCGTGATGCTGTTATGAAGACATTGAGAGAATTTGAAAAGACACAGAAAAACTTAGAAGATAATTTAACAGAAACAAGTAAAAGGCTTACAGACTTAACTGTTGAGAATACTCATCTGAGTAAGGCCCTTCTAGCCAAAGAGAAATTGATTGAAGATCTATGTAAAATAAAGTCCCAGGCAGATACAGAATTCAAGGCACTAATGGCTAGACTAGATTCCACAGAGAAAGAAAATGCTTTTCTAAAATATGAGTTTCGCATGCTTGAGAAGGAGCTTGAGATCCGGAATGAGGAGAGGGAATTTAACAGGAGATCTGCTGAGGCAATACACAAGCAACACTTGGAGAGTGTGAAGAAAATTGCAAAGTTAGAAGCAGAATGCCAGAGATTACGTCTCCTAGTGCGAAAGAGACTTCCAGGTCCTGCTGCTCGGTTATGTGAAGTGGAAGAAGAAAACAAAACTCTAAAAGAAATTCTAGCCAAGAAAAACAATGAACTCCATTCACCAAGACTTTTGTGTGCTCGAACACCCTCTAGATTTGGACAGCCTGAAGCTCAGCTTGGGGAGTCTCCAAAAAGCCAGAAAACTATGGATCTGGTAAGCTATATGAGTTTAATGGATGATTTTGTTGAGATGGAGAAATTAGCAATAGTTTCTGCAGATACACATTTTCAAGGTTCTCATGATGGATCCATTGGAAAATCTCGTGATTGGCTTCAGGATGTTTTGAAGGTGATGTTGGAGCAGAACTGTGTTTCAAAAAGAAGCCTTCATGAACTTCTCGATGACATTAAAATCGCTTTGGGTTTTGTGAATGATCCAAGTGTTGTTGAAGCTGATAAAGCAGCAAGCTCAAGGCATCTGGGAGAACCTGACTCTCAACCTATTAGTGGCTACATCACTTGGAAAGATGAGATAAAGAGGCATTTTGAATCTGCAAAGAAAGATTTGGAAGCAAAGCTACAGTCAGCAACTGATAACAGCCAGGCCTTGATGAATCAGCTTGAGAAATCAGAACAGAGCATTGGAAGCTTAAGGACAGAACTGGAAACCTTGAAAGACTCAAAGGGGTTGATTGAGGATCAAATTGAGAATCAGAAGTTGATTAATGAAGAGCTCAACACCCAGCTCACAGTTGCCAAAGCTAAAATAAACGAGGTTCTCCAGAAGTTTTCAGCGTTGGAAGTGGAATTTGAGGATAAAAGTAACTCCTGCCAAGAACTAGAAGCAACATGTCTTGAGCTTCAGCTTCAGCTAGAAAGTTTCCCGGAGAAGGAAGTTTCAGAGGCCGACCAAGATCAAGAAGGAAAGCAACTCCAAACTGGCTGGGAGATCACAGCAGCTTCAGTGAAGTTGGCAGAGTGCCAAGAAACCATCCTAAACCTAGGGAAGCAGTTAAAGGCTCTAGCTTCACCAAGGGATAGAGCAATTTTTGACAAAGTTTATTCTACAACCAGCACGGCTACAAATGACAAGAAGTTGAGCCATCGCTCCTCCCTTCGGGATCGAATGCTAGCTGATGATGATGCTGACACTGAGGTTTTCAAAAGCCCCAGATGCATATCATGA 1899 41.28 MYLEGHEEEMPLTETLGLEGSMKNLNEKLAAVVDESKTKDDLVTKYARMAEEAIAGREKAEAEALSLKQELDEALNLGVAAKERLSHLDAALKQCMQQLTSLKEEQEQRIRDAVMKTLREFEKTQKNLEDNLTETSKRLTDLTVENTHLSKALLAKEKLIEDLCKIKSQADTEFKALMARLDSTEKENAFLKYEFRMLEKELEIRNEEREFNRRSAEAIHKQHLESVKKIAKLEAECQRLRLLVRKRLPGPAARLCEVEEENKTLKEILAKKNNELHSPRLLCARTPSRFGQPEAQLGESPKSQKTMDLVSYMSLMDDFVEMEKLAIVSADTHFQGSHDGSIGKSRDWLQDVLKVMLEQNCVSKRSLHELLDDIKIALGFVNDPSVVEADKAASSRHLGEPDSQPISGYITWKDEIKRHFESAKKDLEAKLQSATDNSQALMNQLEKSEQSIGSLRTELETLKDSKGLIEDQIENQKLINEELNTQLTVAKAKINEVLQKFSALEVEFEDKSNSCQELEATCLELQLQLESFPEKEVSEADQDQEGKQLQTGWEITAASVKLAECQETILNLGKQLKALASPRDRAIFDKVYSTTSTATNDKKLSHRSSLRDRMLADDDADTEVFKSPRCIS* 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3656156 3664784 + Vvi3g386 Vvi3g386 784061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g386 632 Coils Coil 473 500 - -
Vvi3g386 632 Coils Coil 50 77 - -
Vvi3g386 632 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 413 629 - -
Vvi3g386 632 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 2 308 - -
Vvi3g386 632 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 310 402 - -
Vvi3g386 632 Pfam Filament-like plant protein, long coiled-coil 39 253 IPR008587 -
Vvi3g386 632 Pfam Filament-like plant protein, long coiled-coil 253 310 IPR008587 -
Vvi3g386 632 Pfam Filament-like plant protein, long coiled-coil 418 586 IPR008587 -
Vvi3g386 632 Coils Coil 85 145 - -
Vvi3g386 632 Coils Coil 167 201 - -
Vvi3g386 632 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 413 629 - -
Vvi3g386 632 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 2 308 - -
Vvi3g386 632 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 310 402 - -
Vvi3g386 632 Coils Coil 417 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g386 - - - pop:7457543 597.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g386 Vvi7g1036 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1122 . . Lsi10g00525 . . . Blo04g00480 . . Bda14g00510 Bpe15g00902 . Bma03g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003264 2 4 2 1 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 3 50