Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g389 ATGGCATCTCCTGTGGAATCAGTCCAGTGCTTTGGGCGGAAGAAGACCGCCGTGGCTGTCACCTACTGTGGTGGTCACACCTCCCAGATTTACGCAATCCGCCAAAGCATTGCCAAAGCCCTCGTTGCCTTCTATCAGAAGTACGTCGATGAGCAATCCAAGAAGGAGATCAAGGACATCCTCGTTCGCTACGATCGTACCCTGCTTCTGTTTGGAAACACTTGTATAAATGATGCAAATGGTTACATTTGCGATGTTGTCATGGTAAATATGAATATCATCATTGTGCTAATTGTCTGA 300 46.67 MASPVESVQCFGRKKTAVAVTYCGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLLFGNTCINDANGYICDVVMVNMNIIIVLIV* 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3717641 3718712 - Vvi3g389 Vvi3g389 784064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g389 99 Gene3D - 21 71 IPR014721 -
Vvi3g389 99 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 55 IPR020568 -
Vvi3g389 99 PANTHER 30S RIBOSOMAL PROTEIN S9P 24 71 - -
Vvi3g389 99 PANTHER 30S RIBOSOMAL PROTEIN S9P 1 23 - -
Vvi3g389 99 PANTHER RIBOSOMAL PROTEIN S9 1 23 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi3g389 99 PANTHER RIBOSOMAL PROTEIN S9 24 71 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vvi3g389 99 Pfam Ribosomal protein S9/S16 3 59 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g389 K02960 RP-S16e, RPS16; small subunit ribosomal protein S16e - vvi:100250286 115.931
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g389 . Blo15g00754 Bda06g01077 . Bpe07g00370 Bpe12g00053 . Bma12g00434 Cmo19g00617 Cmo11g01373 . . . . . Cpe04g00287 Cpe15g00483 Bhi05g01072 . . . . . . Cla02g00608 Cam02g0639 Cec02g0637 Cco02g0657 Clacu02g0642 Cmu02g0638 Cre02g0962 . . . . . Csa07g00750 . Cme01g00058 Blo04g00484 Blo13g00579 Bda15g00039 . . . Bma03g00514 Bma08g00805 . . . Cma11g01742 Cma19g00599 . Car19g00452 Cpe14g00290 Cpe01g00432 . . . . . . . . . . . . . . . . Chy01g00061 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071251 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1