Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g39 ATGAGCTCAGGAAGCCAGAGCAGGAGTAGGAGCCCGCAGGATCGCAAGATCCGCACTGATCGCTTGTCCTATCGTAATGCACCTTATAGGAGAGATTCCCGTCGGGGCTTCAGCCAAGGCAATCTGTGCAAGAACTGCAAGCGACCAGGTCATTATGCTAGAGAATGCCCTAATGTGGCAGTTTGTCATAATTGTAGCCTTCCAGGGCACATTGCATCAGAATGCACCACGAGATCACTATGTTGGAACTGTCAAGAACCAGGCCATACAGCTAGCAATTGTCCAAACGAGGGCATCTGCCACACCTGTGGTAAGACTGGACACCTCGCTAGAGACTGCTCAGCTCCCCCAGTTCCCCCCGGGGACCTGAGGCTGTGCAATAACTGCTACAAGCAAGGCCATATTGCTGCTGACTGCACAAATGACAAGGCTTGCAACAACTGTAGGAAAACAGGTCACCTGGCACGCGATTGTCGCAATGATCCTGTATGCAACCTCTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCCAAGGCTAACGTTCTGGGAGACAGGGGTGGTGGGCCTCGCAGCAGTGGGTTCCGAGACATTGTATGTAGGAACTGCCAGCAGCTGGGTCATATGAGCAGGGATTGCGCGGCCCCCTTGATGATCTGTCGCAACTGTGGAGGTCGAGGTCACATGGCATTTGAGTGTCCTTCTGGGAGGTTTATGGACCGCTTTCCCAGGAGGCTAAGGTTTGAGCCTTTGTGGAAATCTAAACCCACTTATTATTAG 780 52.56 MSSGSQSRSRSPQDRKIRTDRLSYRNAPYRRDSRRGFSQGNLCKNCKRPGHYARECPNVAVCHNCSLPGHIASECTTRSLCWNCQEPGHTASNCPNEGICHTCGKTGHLARDCSAPPVPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARDCRNDPVCNLCNVSGHVARQCPKANVLGDRGGGPRSSGFRDIVCRNCQQLGHMSRDCAAPLMICRNCGGRGHMAFECPSGRFMDRFPRRLRFEPLWKSKPTYY* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 547344 562468 - Vvi3g39 Vvi3g39 783714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 62 75 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 80 96 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 61 77 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 42 58 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SMART c2hcfinal6 219 235 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 PANTHER OS10G0545300 PROTEIN 3 245 - -
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 220 235 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SUPERFAMILY Retrovirus zinc finger-like domains 121 161 IPR036875 GO:0003676|GO:0008270
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 43 58 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 42 58 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 163 179 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 199 213 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 219 235 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 61 76 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Pfam Zinc knuckle 81 96 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 SUPERFAMILY Retrovirus zinc finger-like domains 191 237 IPR036875 GO:0003676|GO:0008270
Vvi3g39 259 SUPERFAMILY Retrovirus zinc finger-like domains 79 116 IPR036875 GO:0003676|GO:0008270
Vvi3g39 259 MobiDBLite consensus disorder prediction 11 32 - -
Vvi3g39 259 MobiDBLite consensus disorder prediction 1 33 - -
Vvi3g39 259 Gene3D - 191 237 - -
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 200 213 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 Gene3D - 21 80 - -
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 100 113 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 81 96 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 164 179 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 ProSiteProfiles Zinc finger CCHC-type profile. 145 160 IPR001878 GO:0003676|GO:0008270
Vvi3g39 259 PANTHER - 3 245 - -
Vvi3g39 259 Gene3D - 143 190 - -
Vvi3g39 259 Gene3D - 96 142 - -
Vvi3g39 259 SUPERFAMILY Retrovirus zinc finger-like domains 34 78 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g39 K09250 CNBP; cellular nucleic acid-binding protein - vvi:100250334 541.576
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g39 Vvi18g1043 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42