Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g391 ATGCCCCATTCATTGCGTGCTTTAGCAGCTGACATAGAAGGGAGACACAGGCTAATATCTGAGATTCGTCAGGTTTTGACTGCCATGCGTAGGGGTGAGAGCTTGCGGGCTGAGGATTATATGCTCTTTGACCCGTTCATATATCATGGGATGTCCGAATTGCAGGATAGGCACAGAGATATGCGGCTTGATGTCGATAATATGTCATATGAGGAACTACTGGATTTAGAAGAACGCATAGGAGACGTGAACACTGGATTGAGTGATGAAAAAATACTGAAGTGTATGAAAAGGCAAAAATATTCATCCAATCCAACACCTGAGGTGGAGCCATGTTGTATTTGCCAGGAAGAATATGCTGTTGGAGATGACCTTGGGATACTGGATTGTGGACATGACTTCCATACCAACTGCATCAAACAATGGTTAATGCAGAAGAATCTGTGCCCCATTTGTAAAACAACAGGCTTGGCTACATGA 480 43.75 MPHSLRALAADIEGRHRLISEIRQVLTAMRRGESLRAEDYMLFDPFIYHGMSELQDRHRDMRLDVDNMSYEELLDLEERIGDVNTGLSDEKILKCMKRQKYSSNPTPEVEPCCICQEEYAVGDDLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLAT* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3769535 3782588 + Vvi3g391 Vvi3g391 784066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g391 159 Pfam Ring finger domain 112 153 IPR001841 -
Vvi3g391 159 SUPERFAMILY RING/U-box 111 155 - -
Vvi3g391 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 157 - -
Vvi3g391 159 ProSiteProfiles Zinc finger RING-type profile. 112 153 IPR001841 -
Vvi3g391 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
Vvi3g391 159 SMART ring_2 112 152 IPR001841 -
Vvi3g391 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 157 IPR045191 GO:0061630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g391 Vvi7g1054 ECH
Vvi3g391 Vvi18g743 ECH
Vvi3g391 Vvi7g1049 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g391 - - vvi:100258840 334.339