Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g392 ATGGCTGAAGGAGGAGGCCATGAGGGTTTCTTATGGGAAAACCAGTCATGGGGTTTCTCGAATTCGGATAACTCTGGGGGGAGTGATAAGAAATCTGGGGAGAAGCAACCTGGTTCGGCCTCTAATAGCCAGACTGCAGCCACGGGAATGGATTTGGTACCGCCTGATAAGAAGCGAGGGCGAGGCGGAGCCATCAAGAATGGAAAGAATGGAAAGGGAAGTGGTGAGGGGAATGAAGGAAAAAGCGGTGGTGGTGGTGGCGGTGAATCAGATCATGAGATACATATATGGACAGAGAGAGAAAGGCGGAAGAAGATGAGGAACATGTTTTCTAGTCTTCATGCTTTGCTTCCTCAACTTCCTCCAAAGGCAGACAAGTCCACCATTGTTGATGAAGCAGTGAACTACATCAAAACCCTACAGCACACACTCCAGAAGCTTCAAAAACAAAAGCTAGAAAGGCTTCAAGGTGCAACAACTGTCAACTATGAGCCATCAATAATCACGTCGCAAAAGCTAGCCTTCGACTCAAGGGAGGCTTTCTTAGCTGATCAAGGATCTTCCAGTAACTTAGCCATTACACCATCGAATTCTTCCAACTCTCTTTCAGTCGCTCGGGTTCCTGCAGTATTCCAATCATGGACTTCTCCTAATGTCACTTTGAATGTTTGTGGCAATGAAGCACAAATCAGCGTGTGCTCGCCGAAGAAGCCTGGTCTTTTAACCACCATCTGCTACGTGTTGGAGAAGCATAAACTAGAGGTGATATCTGCTCATGTTTCTTCAGACTATAACCGGAGCATGTACATGATCCAGACCAATGCGAATGGAGCTTTGGATCAGTTCCCTGTGGGATTTCCAATGGAAGAAGTCTACAAGCAAGCTGCAGGAGAGATAATGTTCTGGGCATCCTCTTGA 918 46.84 MAEGGGHEGFLWENQSWGFSNSDNSGGSDKKSGEKQPGSASNSQTAATGMDLVPPDKKRGRGGAIKNGKNGKGSGEGNEGKSGGGGGGESDHEIHIWTERERRKKMRNMFSSLHALLPQLPPKADKSTIVDEAVNYIKTLQHTLQKLQKQKLERLQGATTVNYEPSIITSQKLAFDSREAFLADQGSSSNLAITPSNSSNSLSVARVPAVFQSWTSPNVTLNVCGNEAQISVCSPKKPGLLTTICYVLEKHKLEVISAHVSSDYNRSMYMIQTNANGALDQFPVGFPMEEVYKQAAGEIMFWASS* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3785856 3788100 + Vvi3g392 Vvi3g392 784067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g392 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983
Vvi3g392 305 MobiDBLite consensus disorder prediction 1 94 - -
Vvi3g392 305 PANTHER TRANSCRIPTION FACTOR BHLH95 1 302 - -
Vvi3g392 305 Coils Coil 130 150 - -
Vvi3g392 305 Gene3D - 88 157 IPR036638 GO:0046983
Vvi3g392 305 PANTHER - 1 302 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vvi3g392 305 SMART finulus 98 146 IPR011598 GO:0046983
Vvi3g392 305 CDD ACT_UUR-ACR-like 229 280 - -
Vvi3g392 305 Pfam Helix-loop-helix DNA-binding domain 98 141 IPR011598 GO:0046983
Vvi3g392 305 MobiDBLite consensus disorder prediction 14 49 - -
Vvi3g392 305 CDD bHLH_AtbHLH_like 95 148 IPR045239 -
Vvi3g392 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 140 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g392 - - - vvi:100264010 514.612
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g392 Vvi18g745 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g392 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car11g01091 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010769 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14651 PF00010 HLH 1.10E-10 No_clan Vvi TF