Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g393 ATGGAGGAAAGTGGGCCCAGTAGTCTCACCTTATTTTTGACCAAACTTTGCCAACTAGGGTTAGAGGTGAGTAAATGGAGACACACGTGTGAAGCAGAGTCAGAGATAAGGGGCAGAGTCCAGCCCAGTCCTACGGCTAGAAAGAAAAAAATGCCTGGGAGTTTAGAGCCATTGGATGTGGGTGTTCAGATCCCATACCACTTCAGGTGTCCGATCTCGCTCGAGCTCATGTGTGACCCTGTCACCGTTAGCACGGGTCAGACCTACGACCGAGCCAGCATCGAGTACTGGGTCGGCACCGGCAACACCACCTGCCCCGTCACGCGGTCTTCTCTTACCGACTTCACCCTCATCCCCAACCACACCCTTCGCCGTCTCATCCAGGACTGGTGCGTTGCCAACCGGTCCTTTGGAGTTGAGCGTATTCCCACTCCCAAACAGCCTGCCGACCCAGCCTCGGTTCGGTCTCTGCAGACTCAGGTCTCTTCTCAGTCCAATCCTTCCCACACCAGGCTTTCGGCGGTGAAGCGACTCAGAGGACTCGCTCGTGACTCGGACAAAAACCGCTCTATCATTGGTTCGCATAATGTTCAGGAGGTTCTTCTCCCCGTTATTTTTTCGGATTCGGAGTGTGACTCGGCTGAGTTGAAGCATGAGTCACTCGCGCTTTTGGTGATGTTTCCTCTCTCTGAGTCGGAGTGCGCCCGCCACAAGGCGGTCGCTGCCGGTGCTGTGACTGCTCTCATCGACCGATTGGCCGATTTTGAGAAGTGCGACGTGGAGCGAGCCCTGGCAACAGTGGAGCTGCTCTGCCGCGTTCCGGCGGGTTGCGCCGCCTTCGCAGCACACGCACTCACCGTGCCCCTCCTCGTGAGAAAAATTCTAAAAGTCTCCGACCGCGCAACGGAGTACGCTGCCGGAGCGCTGCTGTCGCTGTGCTCGGCGGCGGAGCAGAGCCAGAGAGAGGCGGTCTCCGCGGGGGTAGTGACTCAGCTTTTGCTGCTGGTACAAAGCGACTGTACGGAAAGAGCAAAGCGCAAAGCACAACTTTTGTTGAAGCTTCTTCGGGATTCGTGGCCAGAAGATTCGGTAGTCAATTCTGACGATTTTGGTTGCAGTGATGTTGCAAAGGAAAAGATAGATGTGATGTTAAATATGTGTTTTGTGGGGGCCATTAGTGTCTTAACTGTGATTAGTTTCAGACGAGGTGATATTTAG 1218 54.76 MEESGPSSLTLFLTKLCQLGLEVSKWRHTCEAESEIRGRVQPSPTARKKKMPGSLEPLDVGVQIPYHFRCPISLELMCDPVTVSTGQTYDRASIEYWVGTGNTTCPVTRSSLTDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPASVRSLQTQVSSQSNPSHTRLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSAELKHESLALLVMFPLSESECARHKAVAAGAVTALIDRLADFEKCDVERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVAKEKIDVMLNMCFVGAISVLTVISFRRGDI* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3794272 3796050 - Vvi3g393 Vvi3g393 784068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g393 405 Pfam U-box domain 64 135 IPR003613 GO:0004842|GO:0016567
Vvi3g393 405 CDD RING-Ubox_PUB 68 109 IPR045210 -
Vvi3g393 405 Gene3D - 144 388 IPR011989 -
Vvi3g393 405 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 236 376 - -
Vvi3g393 405 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 54 234 - -
Vvi3g393 405 SUPERFAMILY RING/U-box 61 138 - -
Vvi3g393 405 PANTHER WDSAM1 PROTEIN 54 234 IPR045185 GO:0061630
Vvi3g393 405 PANTHER WDSAM1 PROTEIN 236 376 IPR045185 GO:0061630
Vvi3g393 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 137 IPR013083 -
Vvi3g393 405 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Vvi3g393 405 SUPERFAMILY ARM repeat 157 357 IPR016024 -
Vvi3g393 405 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g393 - - vvi:100264205 386.726