Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g396 ATGCATTTTCAGCGTCCAACAATGGAATGCTTCACTCCTTTCAGGCTCCTGTATCTCCTCCTCGTTCTCTCAATTGCTATGTCAGCTTCCATGGCAGAAGACCTGGGAACTTACATAATCCACATGGATAAGTCAACCATGCCAATGACCTTCTCCAGTCATCATGACTGGTATCTGTCAATGCTATCATCCATGTCATCCTCGGATGGAGTGCATCCAACCCATCTCTACACATACAACCATGTTTTGGACGGCTTCAGTGCTGTGCTGCTCATGGCCGGAAGGCAAACAACCTTCGAACAAAACCCAATTGCAGTGGGAGCCTTTGCAGCCATGGAGAAAGGGATTTTTGTGTCTTGTTCAGCTGGTAACTCTGGCCCTGAGGGCTACACCATGCTCAATGGAGCTCCTTGGATTACAACCATTGGTGCCGGGACTATTGATAGAGATTATGCGGCCGATGTCACATTTGGCGGTGGCATCTTGACCATCCGAGGAAGATCCGTGTACCCGGAAAACGTGTTGGTCTCGAATGTTTCTCTGTACTTCGGCCATGGAAATAGAAGCAAGGAACTATGTGAAGACTTTGCTCTAGACCCAAAAGATGTTGCAGGCAAAATCGTGTTCTGCTACTTCAACCAATCAGGAGGTGTTAGTCAGGTGCGTGAAGTGGATAGAGCAGGAGCAAAAGGAGCCATCATCAGTTCAGACTCGGAGTTTTTTAATTTTCCTAGTTTTTTCTTTATCCCATTGGTGGTTGTAACCCCCAAAGATGGAGATTTGGTGAAGGACTACATCATCAAATCAGAGAATCCTGTGGTTGATGTTAAGTTCCTGATAACTGTGTTGGGTAGTAAACCAGCCCCTCAAGTTGCCTTTTTCTCATCTCGAGGGCCGAATAATAGGGCCCCAATGATACTGAAACCTGATGTATTGGCTCCTGGGGTGAATATCTTGGCTGCATGGGCACCCAAGGTAGCACTGACACGGGTAGGAGATAACCGCTTGCTCACTGATTACACTCTCCTCTCTGGAACATCTATGTCCTCTCCCCATGCAGTTGGGGTAGCTGCACTGCTGAAATCAGCACACCCAGATTGGAGCTCGGCCGCCATTCGGTCAGCATTGATGACCACAGCATACCTGCTCGACAACACCATTGGATCTATCATTGACATGGACACTGGAGTTGCAGCGACTCCTTTGGACTTTGGAGCAGGGCACATCAACCCTAACATGGCCATGGACCCAGGTCTTATTTATGATATAGAGGTCCAAGACTATATCAATTTCCTGTGTGGACTGAACTACACTAGCAAACAGATTAAGATCATCAGCAGGAGATCAAAGTTCACCTGCGATCAAGCCAATCTAGACCTAAATTACCCTTCATTCATAGTCCTCCTCAACAATAACACCAACACTACTAGCTACACCTTCAAGAGGGTGTTGACAAACGTGGTGGATTCCCCTTCGGTTTATCGGGCAAGTGTGAAGCAACCATCGGGAATGAAAGTTAACGTACAGCCCTCCATGGTTTTCTTTGCAGGAAAATACAGCAAAGCTGAATTCAACATGACAGTAGAGATCAATCTGGGATATGCTAGACCACAGAGCGAATATATTGGAAATTTTGGATATCTAACCTGGTGGGAGGTTAATGGTACCCATGTGGTGAAAAGTCCTATTGTCTCTGCTTTTGCACTTTAA 1710 46.49 MHFQRPTMECFTPFRLLYLLLVLSIAMSASMAEDLGTYIIHMDKSTMPMTFSSHHDWYLSMLSSMSSSDGVHPTHLYTYNHVLDGFSAVLLMAGRQTTFEQNPIAVGAFAAMEKGIFVSCSAGNSGPEGYTMLNGAPWITTIGAGTIDRDYAADVTFGGGILTIRGRSVYPENVLVSNVSLYFGHGNRSKELCEDFALDPKDVAGKIVFCYFNQSGGVSQVREVDRAGAKGAIISSDSEFFNFPSFFFIPLVVVTPKDGDLVKDYIIKSENPVVDVKFLITVLGSKPAPQVAFFSSRGPNNRAPMILKPDVLAPGVNILAAWAPKVALTRVGDNRLLTDYTLLSGTSMSSPHAVGVAALLKSAHPDWSSAAIRSALMTTAYLLDNTIGSIIDMDTGVAATPLDFGAGHINPNMAMDPGLIYDIEVQDYINFLCGLNYTSKQIKIISRRSKFTCDQANLDLNYPSFIVLLNNNTNTTSYTFKRVLTNVVDSPSVYRASVKQPSGMKVNVQPSMVFFAGKYSKAEFNMTVEINLGYARPQSEYIGNFGYLTWWEVNGTHVVKSPIVSAFAL* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3833047 3835366 - Vvi3g396 Vvi3g396 784071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g396 569 Gene3D - 148 283 - -
Vvi3g396 569 ProSitePatterns Serine proteases, subtilase family, serine active site. 345 355 IPR023828 -
Vvi3g396 569 Gene3D Peptidase S8/S53 domain 95 428 IPR036852 GO:0004252|GO:0006508
Vvi3g396 569 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 30 92 - -
Vvi3g396 569 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 102 565 - -
Vvi3g396 569 Pfam Subtilase family 108 393 IPR000209 GO:0006508|GO:0008236
Vvi3g396 569 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 102 565 IPR045051 -
Vvi3g396 569 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 92 IPR045051 -
Vvi3g396 569 Gene3D - 432 567 - -
Vvi3g396 569 SUPERFAMILY Subtilisin-like 98 419 IPR036852 GO:0004252|GO:0006508
Vvi3g396 569 Pfam Peptidase inhibitor I9 37 90 IPR010259 -
Vvi3g396 569 Pfam Fibronectin type-III domain 459 564 IPR041469 -
Vvi3g396 569 CDD PA_subtilisin_like 154 274 - -
Vvi3g396 569 ProSiteProfiles Serine proteases, subtilase domain profile. 1 415 - -
Vvi3g396 569 Pfam PA domain 193 260 IPR003137 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g396 - - - vvi:100267603 935.636
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g396 Vvi18g747 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3