Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g397 ATGGCTGGAGATGTGGGAAGCTATATAATTCACATGGATAAATCAGCCATGCCCATGACCTTCTCCAGTCACCATGACTGGTACATGTCAACACTTTCATCCATATCCTCTCCAGATGGTAGTCTTCCCACCCATCTCTATACCTATAACCATGTTTTGGATGGCTTCAGTGCAGTGCTGTCCAAGGCGCACCTTGATCAGCTGGAGAAGATGCCGGGTCACCTGGCAACATACCCAGATAGCTTTGGAAAGCTACACACCACACACAGCCCAAAATTTCTTGGTCTGGAGAAAAATAGTGGCGCCTGGCCAGAAGGTAAGTTTGGTGAAGACATGATTATTGGGTTGAAGCGACGAGGCTTGAACGTATCGGCGCCTCCCGATGATTATGATTCTCCCAGGGATTTCCATGGACATGGGACTCACACATCGTCTACGGCAGCTGGGAGTCCAGTACGAGGCGCCAATTACTTTGGTTATGCAGAGGGGACGGCTATTGGCATTTCACCCAAGGCTAGGCTTGCCATGTACAAAGTGATTTTCCTCAGTGACCTCACAGATGGCGATGCCGCTGCCTCTGACACATTAGCCGGAATGGACCAAGCCATAGCCGACGGTGTAGATCTCATGTCACTGTCACTGGGGTTCGAGGAGACGACCTTCGAACAAAACCCAATTGCAGTGGGAGCTTTCTCGGCCATGGAAAAAGGGATTTTTGTGTCATGTTCAGCTGGAAACTCTGGCCCAGATGCTTACACTATGTTCAATGGAGCTCCTTGGATTACGACTATTGGTGCTGGGACTATTGATCGAGATTATGCTGCTGATGTCAAACTAGGTAATGGCATCTTAACCGTCAGAGGAAAATCTGTTTATCCAGAAAACTTGCTAATCTCTAACGTCTCTCTCTACTTCGGCTATGGGAATAGAAGCAAGGAACTCTGCGAATACGGTGCTCTAGACCCTGAAGATGTGGCGGGCAAAATTGTGTTCTGCGACATCCCTGAATCAGGAGGAATCCAGTCATATGAAGTGGGGGGAGTAGAAGCTGCAGGAGCCATCTTCAGTTCAGACTCACAAAATTCTTTCTGGCCCAGTGATTTCGATATGCCATATGTGGCTGTAAGCCCCAAGGATGGAGATTTGGTGAAGGACTACATAATCAAGTCACAGAATCCAGTAGTTGATATTAAGTTCCAGATAACAGTGTTGGGCGCTAAACCAGCCCCTCAGGTGGCCGAGTTCTCATCGCGAGGTCCTGATGAGTATTTGCTCTCTGATTATGGTCTCCTGTCTGGAACATCTATGGCATCTCCCCATGCAGTTGGGGTAGCCGCATTACTTAAAGCAGCCCACCCAGATTGGAGCCCAGCTGCTATTCGTTCAGCAATGATGACAACAGCATACCTGCTTGATAACACTCAAGGACCAATCATGGATATGACCACTGGAGTTGCAGGGACTCCTCTCGATTTTGGAGCAGGGCACATAAACCCCAACATGGCCATGGATCCTGGTCTAGTTTATGATATAGAGGCCCAAGACTATATCAATTTCCTGTGTGGATTGAACTACACCAGCAAACAGATAAAGATCATCACCAGGAGATCAAAGTTCAGCTGTGATCAAGCCAATCTAGACCTAAATTACCCTTCATTTATGGTCCTCCTCAACAATACTAACACTACAAGCTACACCTTCAAGAGGGTGTTGACTAATGTAGAGGATACCTATTCCGTTTATCAAGCAAGTGTGAAGCAACCCTCAGGGATGAAAGTTACCGTGCTGCCTTCTACAGTTTCGTTCACAGGAAGATACAGCAAGGCTGAATTCAACATGACGGTAGAGATCAATCTGGGAGATGCCGGACCACAGAGTGATTATATTGGAAATTACGGGTATTTAACCTGGAGGGAGGTTAATGGGACGCATGTTGTGAGAATCCTTGTTGTCCAACTATCTCTTGACCCATTTCAGCCTCCAAAAATGGAATGCATTCCCTACAAGCTTCTCTTCCTCTTTCTTGCTCTCTCAACCTCCGTGGCAGAAGATCTGGGAACCTATATAATCCACATGGATAAATCAGCCATGCCAATGACCTTCTCCAGTCATCATGACTGGTACAGGTCAACGCTCTCATCCATGTCGTCCCCAGATGGTATTCTCCCAACCCATCTCTACACATATAATCACGTTTTGGATGGTTTCAGTGCAGTGCTGTCCCACATGATTATTGGTATACTTGACAGTGGAATTTGGCCAGAGAGTGAGAGTTTCAAGGATAAGGGAATGGCTCCGGTGCCAGATAGATGGAGAGGTGCCTGTGAATCTGGGGTGGAATTTAACTCTTCTTATTGTAACCGAAAACTAATTGGAGCACGGTCTTTCAGTAAAGGGATGAAGCAACGAGGCTTGAATATATCCTTGCCTGATGATTACGATTCTCCCAGGGATTTCCTTGGACACGGGACTCACACATCTGACAGCAGTGATCCGGAAGCGGCTGCCTCAGACACATTAGCCGGAATGGACCAAGCCATCGCAGACGGTGTCGATCTTATGTCTCTATCACTGGGATTCTTCGAGACAACTTTTGACGAAAACCCAATTGCAGTGGGAGCTTTTGCAGCCATGGAGAAAGGGATTTTTGTGTCTTGTTCAGCTGGGAACGCTGGTCCTCATGGTTACACTATCTTCAATGGAGCTCCTTGGATTACAACCATTGGTGCTGGGACTATTGATCGAGATTATGCCGCTGATGTGACACTAGGCAATGGCATCTTAAGAGTCAGAGGAAAATCTGTCTACCCAGAAGACGTAATACCCATACCGTTTATCATGCCAGTATATATATGTGATCTTCTTCAGCGTGCTGGTTTGTCTGAATCAAAGCTCGTGACTTCCCCAATGGCTGTTGGTCATGTTCTCTCCATAGCTGATGGTACTAGATTTGAAGATCCCACCTTGTATCGGAGTCTTGTGGGTGCCCTACAGTATTGCACAATTACTAGACCAGACATTGCTTATACTATTAATAAGTTTTTCCAATTTATGCATGCTCCAACCTCTACTCATCTTCAAGCCGTGAAGCGTGTTCTTCGTTATCTCAAAGGTTCATTGTTTTATGGGCTTTCTTTCCAACCATCTTCCTCCCTTGATCTTATTGCCTATACAGATGCAGATGGGGCATCTTGCCCTGATGATAGACGTAGCACCAATGGCTACTGTATATTTTTTAGAGGCAATTTGATCTCTTGGTCAGCTTCTAAACAAAAGGTGGTTTCTCGCTCTAGTATCGAATCCAAATATAGGGGCTTGGCTAATGCAACAATTGAACTCACTTGGATCCAGTCTCTACTTAAAGAACTCTTTGTTCCCCTGTTTCAGCCACCTGTTCTTTTTTTGTGA 3408 46.19 MAGDVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSISSPDGSLPTHLYTYNHVLDGFSAVLSKAHLDQLEKMPGHLATYPDSFGKLHTTHSPKFLGLEKNSGAWPEGKFGEDMIIGLKRRGLNVSAPPDDYDSPRDFHGHGTHTSSTAAGSPVRGANYFGYAEGTAIGISPKARLAMYKVIFLSDLTDGDAAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFSAMEKGIFVSCSAGNSGPDAYTMFNGAPWITTIGAGTIDRDYAADVKLGNGILTVRGKSVYPENLLISNVSLYFGYGNRSKELCEYGALDPEDVAGKIVFCDIPESGGIQSYEVGGVEAAGAIFSSDSQNSFWPSDFDMPYVAVSPKDGDLVKDYIIKSQNPVVDIKFQITVLGAKPAPQVAEFSSRGPDEYLLSDYGLLSGTSMASPHAVGVAALLKAAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYTFKRVLTNVEDTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFNMTVEINLGDAGPQSDYIGNYGYLTWREVNGTHVVRILVVQLSLDPFQPPKMECIPYKLLFLFLALSTSVAEDLGTYIIHMDKSAMPMTFSSHHDWYRSTLSSMSSPDGILPTHLYTYNHVLDGFSAVLSHMIIGILDSGIWPESESFKDKGMAPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGMKQRGLNISLPDDYDSPRDFLGHGTHTSDSSDPEAAASDTLAGMDQAIADGVDLMSLSLGFFETTFDENPIAVGAFAAMEKGIFVSCSAGNAGPHGYTIFNGAPWITTIGAGTIDRDYAADVTLGNGILRVRGKSVYPEDVIPIPFIMPVYICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAYTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDRRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKELFVPLFQPPVLFL* 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3836733 3850849 - Vvi3g397 Vvi3g397 784072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g397 1135 Gene3D Peptidase S8/S53 domain 87 505 IPR036852 GO:0004252|GO:0006508
Vvi3g397 1135 Pfam Fibronectin type-III domain 547 650 IPR041469 -
Vvi3g397 1135 ProSitePatterns Serine proteases, subtilase family, serine active site. 433 443 IPR023828 -
Vvi3g397 1135 Pfam Peptidase inhibitor I9 687 744 IPR010259 -
Vvi3g397 1135 Pfam Peptidase inhibitor I9 7 85 IPR010259 -
Vvi3g397 1135 Pfam Subtilase family 126 479 IPR000209 GO:0006508|GO:0008236
Vvi3g397 1135 Pfam Subtilase family 831 925 IPR000209 GO:0006508|GO:0008236
Vvi3g397 1135 MobiDBLite consensus disorder prediction 124 148 - -
Vvi3g397 1135 ProSiteProfiles Serine proteases, subtilase domain profile. 93 503 - -
Vvi3g397 1135 CDD RNase_HI_RT_Ty1 1055 1134 - -
Vvi3g397 1135 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 676 739 IPR037045 -
Vvi3g397 1135 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 2 86 IPR037045 -
Vvi3g397 1135 Gene3D - 278 403 - -
Vvi3g397 1135 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 680 742 IPR045051 -
Vvi3g397 1135 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 831 934 IPR045051 -
Vvi3g397 1135 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 743 829 IPR045051 -
Vvi3g397 1135 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 128 421 IPR045051 -
Vvi3g397 1135 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 5 121 IPR045051 -
Vvi3g397 1135 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 423 651 IPR045051 -
Vvi3g397 1135 SUPERFAMILY Subtilisin-like 85 507 IPR036852 GO:0004252|GO:0006508
Vvi3g397 1135 SUPERFAMILY Subtilisin-like 741 928 IPR036852 GO:0004252|GO:0006508
Vvi3g397 1135 CDD PA_subtilisin_like 276 397 - -
Vvi3g397 1135 PRINTS Subtilisin serine protease family (S8) signature 135 148 IPR015500 -
Vvi3g397 1135 PRINTS Subtilisin serine protease family (S8) signature 432 448 IPR015500 -
Vvi3g397 1135 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 743 829 - -
Vvi3g397 1135 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 423 651 - -
Vvi3g397 1135 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 680 742 - -
Vvi3g397 1135 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 5 121 - -
Vvi3g397 1135 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 831 934 - -
Vvi3g397 1135 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 128 421 - -
Vvi3g397 1135 SUPERFAMILY DNA/RNA polymerases 983 1132 IPR043502 -
Vvi3g397 1135 Gene3D - 520 653 - -
Vvi3g397 1135 Gene3D Peptidase S8/S53 domain 740 930 IPR036852 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g397 - - - vvi:100260681 1272.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g397 Vvi18g748 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3