Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g398 ATGGAACACGTCACTCCTTTCAAGCTCCTATGTCTCCTTCTTGTTCTGTCAACTGTTACAACATCTTCCATGTCAGAAGATATAAGAACTTATATAGTTCACATGGATAAATCAGCCATGCCAATTCCCTTCTCCAGTCATCATGACTGGTACTTATCAACCCTCTCATCCTTCTACTCACCAGATGGTATTCTCCCAACCCATCTCTACACCTATAACCATGTGTTGGATGGCTTCAGTGCTGTTCTGTCCCAGTCACACCTTGATCAACTGGAGAAGATGTCCGGCCACCTGGCAACATACCCAGAGACCTTTGGAACAATCCACACCACACACACCCCAAAATTTCTTGGCCTGGAGAATAATTTTGGTTCATGGCCGGGGGGCAACTTTGGTGAAGACATGGTTATTGCACTGAAGCAACGAGGCTTGAACATATCAACACCTGATGATTATGATTCCCCAAGGGATTTCTATGGACATGGAACTCATACATCATCTACAGCAGCTGGGAGTCCAGTGGCAGACGCCAATTACTTTGGCTATGCCAAGGGTACAGCTACTGGCATTGCACCCAAGGCTCGGCTTGCCATGTATAAAGTGCTCTTTTACAATGATACTTACGAGTCAGCTGCCTCAGACACATTAGCCGGAATAGACCAAGCCATAGCGGATGGTGTTGATCTCATGTCACTTTCACTGGGGTTCTCTGAGACAACTTTTGAAGAAAACCCAATTGCCGTTGGAGCTTTTGCAGCCATGGAGAAAGGGATTTTTGTGTCTTGTTCAGCTGGAAACTCCGGCCCTCATGGTTACACTATATTCAATGGAGCTCCTTGGATTACAACCATTGGTGCTGGGACTATTGATTTAGATTATGCCGCTGACGTCTCACTGGGCAATGGCATATTGAACATCAGAGGAAAATCAGTTTATCCGGAAGACTTGTTAATCTCCCAGGTTCCTCTCTACTTCGGTCATGGAAATAGAAGCAAAGAACTCTGTGAGGACAATGCCATAGACCCAAAAGATGCTGCAGGCAAGATTGTGTTCTGCGACTTCTCTGAATCAGGAGGAATCCAGTCAGATGAAATGGAGAGAGTAGGAGCTGCCGGAGCCATATTCAGTACAGACTCAGGGATTTTTCTCTCGCCCAGTGATTTCTACATGCCATTTGTGGCTGTAAGCCCCAAGGATGGAGATTTGGTGAAGGACTACATAATCAAATCAGAGAATCCTGTAGTTGATATTAAGTTCCAGATAACAGTATTGGGTGCTAAACCAGCTCCTATGGTGGCTTGGTTCTCGTCACGAGGTCCTAGTCGAATTACACCAATAGGGGACTATTACCTGCTCACCAATTACGCTCTCTTGTCTGGAACCTCTATGGCCTCTCCCCATGCAGTTGGGGTAGCTGCACTGCTGAAATCAGCACACCCAGATTGGAGCCCAGCTGCCGTTCGCTCGGCAATGATGACAACAGCATACCTGCTTGATAACACTCAAGGACCAATCATGGATATGACCACTGGAGTTGCAGGGACTCCTCTCGATTTTGGAGCAGGGCACATAAACCCCAACATGGCCATGGATCCTGGTCTAGTTTATGATATAGAGGCCCAAGACTATATCAATTTCCTGTGTGGATTGAACTACACCAGCAAACAGATTAAGATCATCACCAGGAGATCAAAGTTCAGCTGTGATCAAGCCAATCTAGACCTAAATTACCCTTCATTTATGGTCCTCCTCAACAATACTAACACTACAAGCTACACCTTCAAGAGGGTGTTGACAAATGTAGAGAATACCCATTCCGTTTATCATGCCAGTGTGAAGCTACCTTCAGGAATGAAAGTTTCTGTACAGCCCTCTGTAGTATCTTTCGCAGGAAAGTACAGCAAGGCTGAATTCAACATGACGGTAGAGATCAATCTGGGAGATGCCAGACCACAGAGCGATTACATTGGAAATTTCGGGTATTTAACCTGGTGGGAGGCTAATGGGACTCATGTTGTGAGCAGTCCTATTGTCTCCGCCATTGCACCTATCATCAGAACTTGA 2064 45.88 MEHVTPFKLLCLLLVLSTVTTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPDGILPTHLYTYNHVLDGFSAVLSQSHLDQLEKMSGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMVIALKQRGLNISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYKVLFYNDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCSAGNSGPHGYTIFNGAPWITTIGAGTIDLDYAADVSLGNGILNIRGKSVYPEDLLISQVPLYFGHGNRSKELCEDNAIDPKDAAGKIVFCDFSESGGIQSDEMERVGAAGAIFSTDSGIFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFSSRGPSRITPIGDYYLLTNYALLSGTSMASPHAVGVAALLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYTFKRVLTNVENTHSVYHASVKLPSGMKVSVQPSVVSFAGKYSKAEFNMTVEINLGDARPQSDYIGNFGYLTWWEANGTHVVSSPIVSAIAPIIRT* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3852061 3854362 - Vvi3g398 Vvi3g398 784073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g398 687 PRINTS Subtilisin serine protease family (S8) signature 132 151 IPR015500 -
Vvi3g398 687 PRINTS Subtilisin serine protease family (S8) signature 157 170 IPR015500 -
Vvi3g398 687 PRINTS Subtilisin serine protease family (S8) signature 459 475 IPR015500 -
Vvi3g398 687 ProSitePatterns Serine proteases, subtilase family, serine active site. 460 470 IPR023828 -
Vvi3g398 687 Gene3D - 547 681 - -
Vvi3g398 687 Gene3D - 290 424 - -
Vvi3g398 687 Gene3D Peptidase S8/S53 domain 147 543 IPR036852 GO:0004252|GO:0006508
Vvi3g398 687 Pfam Subtilase family 145 508 IPR000209 GO:0006508|GO:0008236
Vvi3g398 687 Pfam Peptidase inhibitor I9 30 95 IPR010259 -
Vvi3g398 687 SUPERFAMILY Subtilisin-like 108 534 IPR036852 GO:0004252|GO:0006508
Vvi3g398 687 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 109 IPR037045 -
Vvi3g398 687 CDD PA_subtilisin_like 296 417 - -
Vvi3g398 687 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 23 143 - -
Vvi3g398 687 PANTHER SERINE PROTEASE 2, PUTATIVE-RELATED 140 679 - -
Vvi3g398 687 Pfam Fibronectin type-III domain 574 678 IPR041469 -
Vvi3g398 687 ProSiteProfiles Serine proteases, subtilase domain profile. 104 530 - -
Vvi3g398 687 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 23 143 IPR045051 -
Vvi3g398 687 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 140 679 IPR045051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g398 - - - vvi:100265894 1303.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g398 Vvi18g749 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024415 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3